Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
☆39Jun 18, 2025Updated last year
Alternatives and similar repositories for fastq_utils
Users that are interested in fastq_utils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Expression Atlas☆27May 2, 2019Updated 7 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated last year
- fastx-utils using klib☆19Sep 1, 2020Updated 5 years ago
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆11Nov 9, 2020Updated 5 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆22May 9, 2026Updated last month
- An R interface to the MEME Suite☆54Jan 7, 2026Updated 5 months ago
- plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style☆17Dec 19, 2025Updated 6 months ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆14Jun 9, 2026Updated last week
- Introduction to Ancient Metagenomics Book☆15Apr 10, 2026Updated 2 months ago
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated 11 months ago
- main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datase…☆114Jan 20, 2023Updated 3 years ago
- Utilities for large scale distributed single cell data processing☆24Jan 20, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org☆14Updated this week
- Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data☆60Feb 8, 2026Updated 4 months ago
- finding conserved regions in highly diverse genomes☆16May 25, 2026Updated 3 weeks ago
- ☆15Oct 14, 2023Updated 2 years ago
- A nextflow pipeline for calling exome CNVs☆14May 28, 2026Updated 3 weeks ago
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 7 months ago
- A repository housing metadata and data files (or links to data files) that are being prepared as sample data bundles for various uses.☆13Feb 12, 2022Updated 4 years ago
- Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…☆17Jan 23, 2017Updated 9 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆11Mar 10, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- Tools for assessing clustering robustness☆32Apr 2, 2026Updated 2 months ago
- Hungarian tokenizer.☆14Mar 15, 2022Updated 4 years ago
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 5 years ago
- ☆10Aug 29, 2023Updated 2 years ago
- Set of tools for viral metagenomics.☆17Jun 1, 2026Updated 2 weeks ago
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆24Feb 23, 2026Updated 3 months ago
- A Plant Disease Detector App based on Nested Transfer Learning☆12May 18, 2026Updated last month
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A modified Ziggurat Algorithm for efficiently generating exponentially- and normally-distributed PseudoRandom Numbers (PRNs).☆13May 21, 2025Updated last year
- Single-Cell Sequencing Quality Control and Processing Software☆30Sep 16, 2019Updated 6 years ago
- ☆15May 22, 2025Updated last year
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- ☆12Jun 12, 2023Updated 3 years ago
- ☆23Jun 7, 2024Updated 2 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago