nunofonseca / fastq_utilsLinks
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
☆37Updated 5 months ago
Alternatives and similar repositories for fastq_utils
Users that are interested in fastq_utils are comparing it to the libraries listed below
Sorting:
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 6 months ago
- Genomic Association Tester☆33Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 9 months ago
- SingleCell Nanopore sequencing data analysis☆61Updated 5 months ago
- BigWig and BAM utilities☆98Updated last year
- Find and characterise transposable element insertions☆20Updated 2 years ago
- A program for the analysis of single cell nanopore long read data☆19Updated 4 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated last week
- QDNAseq package for Bioconductor☆53Updated last year
- Publication quality NGS track plotting☆115Updated last month
- Reference genome resource manager☆74Updated last year
- ☆21Updated last month
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- ☆63Updated 2 months ago
- ☆49Updated 2 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆50Updated last month
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 9 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆93Updated last week
- Tools for analyzing DNA methylation data☆44Updated last week
- Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data☆19Updated 3 years ago
- ☆33Updated this week
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 5 months ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 3 years ago