nunofonseca / fastq_utilsLinks
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
☆37Updated 5 months ago
Alternatives and similar repositories for fastq_utils
Users that are interested in fastq_utils are comparing it to the libraries listed below
Sorting:
- BigWig and BAM utilities☆99Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 7 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- ☆29Updated last year
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated 2 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Reference genome resource manager☆74Updated 2 years ago
- Genomic Association Tester☆34Updated 2 years ago
- Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data☆19Updated 3 years ago
- QDNAseq package for Bioconductor☆53Updated last year
- A program for the analysis of single cell nanopore long read data☆20Updated 5 months ago
- Find and characterise transposable element insertions☆20Updated 2 years ago
- Tip and tricks for BAM files