Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
☆39Jun 18, 2025Updated last year
Alternatives and similar repositories for fastq_utils
Users that are interested in fastq_utils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Expression Atlas☆27May 2, 2019Updated 7 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated last year
- fastx-utils using klib☆19Sep 1, 2020Updated 5 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆22May 9, 2026Updated 3 months ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13May 1, 2023Updated 3 years ago
- An R interface to the MEME Suite☆54Jan 7, 2026Updated 7 months ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆14Jun 9, 2026Updated 2 months ago
- Introduction to Ancient Metagenomics Book☆16Jul 8, 2026Updated last month
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- A Plant Disease Detector App based on Nested Transfer Learning☆12Aug 3, 2026Updated last week
- main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datase…☆114Jan 20, 2023Updated 3 years ago
- <<------ Use SnapATAC!!☆26Mar 15, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Utilities for large scale distributed single cell data processing☆24Jan 20, 2026Updated 6 months ago
- A modified Ziggurat Algorithm for efficiently generating exponentially- and normally-distributed PseudoRandom Numbers (PRNs).☆13May 21, 2025Updated last year
- Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data☆60Feb 8, 2026Updated 6 months ago
- Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org☆14Updated this week
- ☆15Oct 14, 2023Updated 2 years ago
- ☆15May 22, 2025Updated last year
- finding conserved regions in highly diverse genomes☆16May 25, 2026Updated 2 months ago
- A repository housing metadata and data files (or links to data files) that are being prepared as sample data bundles for various uses.☆13Feb 12, 2022Updated 4 years ago
- Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…☆17Jan 23, 2017Updated 9 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 8 months ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆12Mar 10, 2022Updated 4 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- Tools for assessing clustering robustness☆32Jul 22, 2026Updated 2 weeks ago
- quick qc on long-read alignment files. Show read-length and depth distributions☆23Apr 24, 2026Updated 3 months ago
- ☆24Jun 7, 2024Updated 2 years ago
- ☆18Apr 26, 2026Updated 3 months ago
- ☆10Aug 29, 2023Updated 2 years ago
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Integrative virome pipeline☆14Nov 4, 2024Updated last year
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Updated this week
- Single-Cell Sequencing Quality Control and Processing Software☆30Sep 16, 2019Updated 6 years ago
- Set of tools for viral metagenomics.☆17Jun 1, 2026Updated 2 months ago
- Analysis tools for PhIP-seq experiments☆12Jan 24, 2022Updated 4 years ago
- Make coverage plots from bam files!☆15Mar 17, 2026Updated 4 months ago
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago