FastTree 2: Approximately-Maximum-Likelihood Trees for Large Alignments
☆41Apr 30, 2026Updated 3 months ago
Alternatives and similar repositories for fasttree
Users that are interested in fasttree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- REcombination BARcode detector.☆17Apr 2, 2024Updated 2 years ago
- Distance-based Phylogenetic Placer☆23Jul 13, 2026Updated last month
- A Python package to update the MLST database for the mlst tool.☆30Jul 22, 2026Updated 3 weeks ago
- Graphical Representation of Ancestral Sequence Predictions☆14Mar 6, 2023Updated 3 years ago
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- code repo for mobileOG-db☆49Jul 30, 2026Updated 2 weeks ago
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 3 months ago
- Simultaneous Classification and Motif Identification(eCAMI)☆11Nov 21, 2021Updated 4 years ago
- ☆41Apr 9, 2026Updated 4 months ago
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆203Jan 29, 2026Updated 6 months ago
- Greening lab hydrogenase database☆19Jun 26, 2025Updated last year
- Sketch phylogenetic trees and networks☆26Aug 3, 2026Updated 2 weeks ago
- Automatically exported from code.google.com/p/prank-msa☆40Mar 19, 2026Updated 4 months ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- Viroid-like circRNA discovery and analysis suite☆19Nov 11, 2023Updated 2 years ago
- More scalable dereplication for metagenome assembled genomes☆87Aug 3, 2026Updated 2 weeks ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 10 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆46Updated this week
- Source code for TreeBASE web application and database☆16May 18, 2026Updated 3 months ago
- ☆25Mar 27, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 8 months ago
- A listing of the commands, protocols and other notes that I take on a daily basis☆11Oct 25, 2023Updated 2 years ago
- ☆30Mar 6, 2025Updated last year
- Advanced Linux commands, regular expressions, shell scripting, and their integration into SLURM scripts.☆16Jul 23, 2020Updated 6 years ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Virus Protein Structural Analysis Toolkit☆14Sep 9, 2024Updated last year
- HyPhy tutorials☆11Apr 9, 2018Updated 8 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Sep 13, 2022Updated 3 years ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Jan 23, 2026Updated 6 months ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆269Updated this week
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆335Jul 22, 2026Updated 3 weeks ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated last year
- Microbial RNA annotation☆307Apr 12, 2026Updated 4 months ago
- ☆14Sep 2, 2021Updated 4 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆275Mar 20, 2025Updated last year