mlin / GenomicSQLiteLinks
Genomics Extension for SQLite
☆168Updated last year
Alternatives and similar repositories for GenomicSQLite
Users that are interested in GenomicSQLite are comparing it to the libraries listed below
Sorting:
- Efficient variant-call data storage and retrieval library using the TileDB storage library.☆101Updated this week
- WebAssembly modules for genomics☆259Updated last week
- An extensible python-based genomics visualization engine☆145Updated 2 years ago
- Command line utility for manipulating Illumina-generated FASTQ files.☆95Updated last month
- The D4 Quantitative Data Format☆169Updated last month
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆59Updated 2 years ago
- High performance data storage for importing, querying and transforming variants.☆99Updated 8 months ago
- Workflow Description Language developer tools & local runner☆200Updated 2 months ago
- GA4GH Variation Representation Python Implementation☆61Updated last week
- Monitor computational workflows in real time☆73Updated last year
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆145Updated 6 months ago
- Transcript versions for HGVS libraries☆33Updated 2 months ago
- A collection of reusable WDL tasks. Category:Other☆88Updated last month
- Implicit Interval Tree with Interpolation Index☆42Updated 3 years ago
- Benchmarking programming languages/implementations for common tasks in Bioinformatics☆185Updated 4 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆111Updated last year
- ☆50Updated 3 years ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆224Updated 4 months ago
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆130Updated last week
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago
- A port of biocommons/hgvs to the Rust programming language☆16Updated 2 weeks ago
- using all the bits for echt rapid variant annotation and filtering☆152Updated 10 months ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆88Updated last week
- Fasten toolkit, for streaming operations on fastq files☆81Updated 2 months ago
- Super small biological datasets for unit testing☆62Updated 6 years ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆71Updated 3 months ago
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆172Updated 2 months ago
- Framework for building fast genomics web tools with WebAssembly and WebWorkers☆116Updated 3 months ago
- Per-base per-nucleotide depth analysis☆143Updated last month
- Truly parallel gzip decompression☆124Updated 6 years ago