Genomics Extension for SQLite
☆171Sep 3, 2024Updated 2 years ago
Alternatives and similar repositories for GenomicSQLite
Users that are interested in GenomicSQLite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implicit Interval Tree with Interpolation Index☆43Jul 13, 2022Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆59Feb 17, 2022Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 2 months ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆60Oct 29, 2023Updated 2 years ago
- The D4 Quantitative Data Format☆176Nov 28, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Mar 8, 2022Updated 4 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- Per-base per-nucleotide depth analysis☆151May 9, 2026Updated 5 months ago
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Quality of life improvements for Bioinformatics in Python.☆35Sep 15, 2026Updated 3 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 6 years ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 8 years ago
- Bayesian haplotype-based mutation calling☆327Feb 13, 2026Updated 7 months ago
- AWS lambda S3 + rust-htslib: A serverless bioinformatics example☆14Jun 7, 2022Updated 4 years ago
- Benchmarking programming languages/implementations for common tasks in Bioinformatics☆185Dec 9, 2021Updated 4 years ago
- Read CRAM v3 and v2 in node or in the browser☆18Oct 1, 2026Updated last week
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- evaluating vcf parsing libraries☆19Mar 1, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- These scripts reformat a VCF into a SQLite database, with R☆15Jul 15, 2021Updated 5 years ago
- Unfazed by genomic variant phasing☆29May 26, 2024Updated 2 years ago
- Pan gGnome Viewer☆10Sep 24, 2026Updated 2 weeks ago
- succinct labeled graphs with collections and paths☆15Nov 18, 2018Updated 7 years ago
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago
- A visualization grammar and GPU-accelerated toolkit for genomic data☆235Updated this week
- use the noise☆14Apr 15, 2020Updated 6 years ago
- Fast, flexible and extensible genome browser.☆343Jun 17, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 5 years ago
- Structural Variant Index☆77Jul 1, 2026Updated 3 months ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆62Dec 27, 2022Updated 3 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 7 months ago
- A genome browser designed for complex structural variants and long reads.☆306Aug 19, 2026Updated last month
- Substring index for paths in a graph☆63Sep 30, 2026Updated last week