Alternatives and similar repositories for GenomicSQLite:

Users that are interested in GenomicSQLite are comparing it to the libraries listed below

• nspies / genomeview
  An extensible python-based genomics visualization engine
  ☆144Updated last year
• joiningdata / lollipops
  Lollipop-style mutation diagrams for annotating genetic variations.
  ☆188Updated 5 months ago
• slowkow / pytabix
  Retrieve data in genomic intervals with a Python interface for tabix.
  ☆83Updated 7 years ago
• brentp / goleft
  goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
  ☆219Updated 4 months ago
• bedops / bedops
  BEDOPS: high-performance genomic feature operations
  ☆314Updated last year
• lgmgeo / AnnotSV
  Annotation and Ranking of Structural Variation
  ☆237Updated last month
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆99Updated 3 weeks ago
• lh3 / readfq
  Fast multi-line FASTA/Q reader in several programming languages
  ☆174Updated 3 years ago
• shenwei356 / kmcp
  Accurate metagenomic profiling && Fast large-scale sequence/genome searching
  ☆185Updated last year
• dpryan79 / MethylDackel
  A (mostly) universal methylation extractor for BS-seq experiments.
  ☆169Updated 8 months ago
• vibansal / HapCUT2
  software tools for haplotype assembly from sequence data
  ☆215Updated last week
• cmdcolin / oddgenes
  A small database of weird gene annotations
  ☆202Updated 3 weeks ago
• Illumina / paragraph
  Graph realignment tools for structural variants
  ☆156Updated 2 years ago
• brentp / smoove
  structural variant calling and genotyping with existing tools, but, smoothly.
  ☆245Updated 8 months ago
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆126Updated last year
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 3 years ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆125Updated last month
• igvteam / igv-webapp
  IGV Web App
  ☆120Updated this week
• ryanlayer / giggle
  Interval data structure
  ☆231Updated 2 months ago
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆116Updated 4 years ago
• ekg / seqwish
  alignment to variation graph inducer
  ☆145Updated last week
• brentp / echtvar
  using all the bits for echt rapid variant annotation and filtering
  ☆148Updated 3 months ago
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆86Updated last year
• brentp / vcfanno
  annotate a VCF with other VCFs/BEDs/tabixed files
  ☆369Updated last year
• haowenz / chromap
  Fast alignment and preprocessing of chromatin profiles
  ☆196Updated 2 months ago
• brentp / peddy
  genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
  ☆136Updated 3 years ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆75Updated last month
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆144Updated 8 months ago
• divonlan / genozip
  A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…
  ☆160Updated last month
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆113Updated last month