Jupyter Notebooks on Azure for Genomics Data Analysis
☆112May 9, 2025Updated last year
Alternatives and similar repositories for genomicsnotebook
Users that are interested in genomicsnotebook are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microsoft Genomics implementation of the Broad Institute's Cromwell workflow engine on Azure☆141May 16, 2025Updated last year
- Lesson on data analysis and visualization in R for genomics☆43Feb 13, 2019Updated 7 years ago
- Programming for Biology @ CSHL 2023☆14Oct 17, 2025Updated 9 months ago
- Genome-wide association studies identify genetic variations associated with a target disease or trait. Researchers and clinicians can use…☆11Apr 12, 2024Updated 2 years ago
- ☆12Sep 27, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Cromwell output organizer☆13May 18, 2021Updated 5 years ago
- Analysis tools for longevity research☆22Jul 23, 2017Updated 8 years ago
- ☆25May 19, 2021Updated 5 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Jul 18, 2023Updated 3 years ago
- An example of bioinformatics and bigdata tools can playing nicely together☆14May 17, 2016Updated 10 years ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 10 years ago
- [DEPRECATED] An R package for Google Genomics API queries.☆46Mar 15, 2023Updated 3 years ago
- ☆93Jul 13, 2026Updated last week
- Plotly BioVisualization 🎯 Interactive Needle and Manhattan Plots & Alignment Viewer☆11Feb 28, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Proof of concept code from Gretel.ai and Illumina using generative neural networks to create synthetic versions of mouse genotype and phe…☆33Jan 19, 2022Updated 4 years ago
- All of Us public data browser.☆15Updated this week
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 6 months ago
- Data and additional information from the initial MAS-ISO-seq study, "High-throughput RNA isoform sequencing using programmable cDNA conca…☆12Feb 24, 2023Updated 3 years ago
- Quality control methods for human genomic variants.☆61Sep 1, 2022Updated 3 years ago
- Gene expression viewer template☆12Aug 30, 2017Updated 8 years ago
- Topics In Data Science and Bioinformatics☆79Feb 15, 2024Updated 2 years ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 8 years ago
- A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.☆17Nov 14, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆33Feb 23, 2026Updated 4 months ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Jun 27, 2025Updated last year
- dplyr verbs for clusterProfiler outputs☆13Mar 12, 2020Updated 6 years ago
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Sep 18, 2025Updated 10 months ago
- ☆10Jan 25, 2019Updated 7 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆38May 21, 2024Updated 2 years ago
- FastTrack for Azure AzureML Live event☆14Apr 18, 2025Updated last year
- Bremges et al. (2015). GigaScience, 4:33.☆12Dec 29, 2023Updated 2 years ago
- R package to explore active transposable elements with RNA-seq data☆21Nov 25, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆20Jun 14, 2024Updated 2 years ago
- machine learning for genomic variants☆147Jun 23, 2026Updated 3 weeks ago
- Genomic Features in Python from BioConductor's AnnotationHub☆23Jul 13, 2026Updated last week
- MeSH Enrichment and Semantic analyses☆12Jun 30, 2026Updated 3 weeks ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆19Jul 11, 2022Updated 4 years ago
- k-mer similarity analysis pipeline☆23Apr 30, 2026Updated 2 months ago
- Python and C++ code for reading and writing genomics data.☆802Dec 9, 2021Updated 4 years ago