microsoft / genomicsnotebookLinks
Jupyter Notebooks on Azure for Genomics Data Analysis
☆111Updated 8 months ago
Alternatives and similar repositories for genomicsnotebook
Users that are interested in genomicsnotebook are comparing it to the libraries listed below
Sorting:
- Microsoft Genomics implementation of the Broad Institute's Cromwell workflow engine on Azure☆141Updated 7 months ago
- Source code and related materials for the O'Reilly book☆98Updated 3 years ago
- ☆27Updated 4 months ago
- Bioinformatics on GCP, AWS or Azure☆59Updated 3 months ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆104Updated 6 months ago
- [DEPRECATED] - A GA4GH Task Execution Service (TES) compatible implementation for Azure Compute☆18Updated 2 years ago
- ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov…☆82Updated 5 months ago
- ☆29Updated 3 months ago
- A proof of concept of RNAseq pipeline☆82Updated 2 months ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆71Updated 2 months ago
- Call and score variants from WGS/WES of rare disease patients.☆112Updated this week
- This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor …☆52Updated 2 weeks ago
- Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the …☆28Updated 5 years ago
- GCP for Bioinformatics Researchers☆285Updated 7 months ago
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆119Updated 7 months ago
- Project Manager for NGS data analysis☆30Updated this week
- ☆146Updated last year
- GA4GH Variation Representation Python Implementation☆61Updated this week
- machine learning for genomic variants☆147Updated last month
- A Python package for pharmacogenomics (PGx) research☆82Updated last week
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- Genome-wide imputation pipeline☆31Updated last year
- Educational materials for learning WDL☆131Updated last year
- Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices☆11Updated 5 years ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Updated 6 years ago
- Example Nextflow pipelines and programming techniques☆106Updated 3 months ago
- A modular annotation tool for genomic variants☆142Updated 2 weeks ago
- High performance data storage for importing, querying and transforming variants.☆99Updated 7 months ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago