Alternatives and similar repositories for genomicsnotebook

Users that are interested in genomicsnotebook are comparing it to the libraries listed below

• microsoft / CromwellOnAzure
  Microsoft Genomics implementation of the Broad Institute's Cromwell workflow engine on Azure
  ☆139Updated 2 months ago
• broadinstitute / genomics-in-the-cloud
  Source code and related materials for the O'Reilly book
  ☆96Updated 2 years ago
• sib-swiss / multiomics-data-analysis-and-integration-training
  ☆23Updated 4 months ago
• lynnlangit / TeamTeri
  Bioinformatics on GCP, AWS or Azure
  ☆57Updated last month
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆77Updated last month
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆49Updated 4 years ago
• ncbi / clinvar
  ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov…
  ☆81Updated 7 months ago
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆125Updated last month
• lynnlangit / gcp-for-bioinformatics
  GCP for Bioinformatics Researchers
  ☆267Updated last month
• lynnlangit / aws-for-bioinformatics
  AWS for Bioinformatics Researchers
  ☆166Updated 10 months ago
• microsoft / tes-azure-legacy
  [DEPRECATED] - A GA4GH Task Execution Service (TES) compatible implementation for Azure Compute
  ☆18Updated last year
• broadinstitute / gnomad_methods
  Hail helper functions for the gnomAD project and Translational Genomics Group
  ☆96Updated this week
• gatk-workflows / gatk4-data-processing
  Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
  ☆155Updated 2 years ago
• nf-core / raredisease
  Call and score variants from WGS/WES of rare disease patients.
  ☆104Updated last week
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆84Updated 6 years ago
• PharmGKB / PharmCAT
  The Pharmacogenomic Clinical Annotation Tool
  ☆140Updated 2 months ago
• sib-swiss / statistics-and-machine-learning-training
  ☆28Updated 3 months ago
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆38Updated 3 years ago
• MaayanLab / biojupies
  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
  ☆115Updated last month
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆151Updated 5 months ago
• KalinNonchev / gnomAD_DB
  This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor …
  ☆48Updated last month
• Bioinformatics-Research-Network / skill-assessments
  Training requirements for joining projects
  ☆77Updated last year
• bioinform / somaticseq
  An ensemble approach to accurately detect somatic mutations using SomaticSeq
  ☆196Updated last week
• NIGMS / NIGMS-Sandbox
  Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NI…
  ☆74Updated last month
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆75Updated 5 months ago
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆90Updated 3 months ago
• MaayanLab / Zika-RNAseq-Pipeline
  An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
  ☆103Updated 3 years ago
• konradjk / loftee
  ☆178Updated 2 years ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆87Updated last month
• hartwigmedical / hmftools
  Various algorithms for analysing genomics data
  ☆234Updated this week