Alternatives and similar repositories for R-genomics

Users that are interested in R-genomics are comparing it to the libraries listed below

• datacarpentry / shell-genomics
  Introduction to the Command Line for Genomics
  ☆67Updated 2 weeks ago
• datacarpentry / genomics-workshop
  Genomics Workshop Overview
  ☆47Updated 2 weeks ago
• datacarpentry / wrangling-genomics
  Data Wrangling and Processing for Genomics
  ☆72Updated 2 weeks ago
• Przemol / seqplots
  SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…
  ☆87Updated 3 years ago
• danknights / mwas
  Perform microbiome-wide association studies with a variety of models
  ☆18Updated 8 years ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆76Updated 2 years ago
• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• lawremi / ggbio
  Grid and ggplot2 based visualization for biological data
  ☆115Updated 3 months ago
• seandavi / Bioc2017BigDataWorkshopSession
  Tutorial for working with cloud infrastructure and AWS from R
  ☆20Updated 8 years ago
• datacarpentry / genomics-r-intro
  Intro to R and RStudio for Genomics
  ☆30Updated last week
• parklab / nozzle
  Nozzle is a report generation toolkit for data analysis pipelines implemented in R.
  ☆67Updated 9 years ago
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆46Updated last month
• lcolladotor / derfinder
  Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches
  ☆44Updated last year
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 6 years ago
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆21Updated last year
• joey711 / shiny-phyloseq
  An interactive web application for demonstrating and using phyloseq.
  ☆60Updated 6 years ago
• UW-GAC / analysis_pipeline
  TOPMed analysis pipeline
  ☆52Updated 2 years ago
• SISBID / Data-Visualization
  Materials for Module 2 of the SISBID Workshop, Visualization of Biomedical Big Data
  ☆26Updated 8 years ago
• friend1ws / pmsignature
  R package for extracting mutation signatures from a list of somatic mutations
  ☆37Updated 6 years ago
• nathanhaigh / 2019_EMBL-ABR_Snakemake_webinar
  Scripts and Snakemake pipeline used in the EMBL-ABR webinar
  ☆13Updated 6 years ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆42Updated last year
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 5 months ago
• joey711 / biom
  Development version of the biom package for R
  ☆24Updated 4 years ago
• ngs-docs / angus
  Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
  ☆108Updated 2 years ago
• datacarpentry / organization-genomics
  Project Organization and Management for Genomics
  ☆25Updated 2 weeks ago
• spholmes / F1000_workflow
  ☆43Updated 8 years ago
• widdowquinn / ten_great_papers
  Ten great papers for wet lab biologists starting out in computational biology
  ☆53Updated 6 years ago
• lvulliard / BioCircos.R
  Htmlwidgets binding R commands to the BioCircos.js library
  ☆39Updated 6 years ago
• Bioconductor / GoogleGenomics
  [DEPRECATED] An R package for Google Genomics API queries.
  ☆45Updated 2 years ago
• carpentries-incubator / bioc-project
  Introduction to the Bioconductor project
  ☆19Updated 3 months ago