kuleshov / gwaskbView external linksLinks
Machine-curated database of genetic disease and genome-wide association studies
☆57Apr 9, 2019Updated 6 years ago
Alternatives and similar repositories for gwaskb
Users that are interested in gwaskb are comparing it to the libraries listed below
Sorting:
- TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…☆15Jul 25, 2022Updated 3 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Specification for the GWAS-VCF format (manuscript in preparation)☆26Aug 3, 2021Updated 4 years ago
- Independent Hypothesis Weighting☆16Sep 25, 2023Updated 2 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 6 years ago
- Sample code for ldsc analyses in UKBB☆33May 4, 2023Updated 2 years ago
- Convert GWAS summary statistics to VCF☆48Mar 11, 2023Updated 2 years ago
- PRS-on-SPARK☆18Feb 4, 2021Updated 5 years ago
- Learn and validate subtypes from multiple traits☆20Jun 15, 2021Updated 4 years ago
- ☆10Aug 28, 2025Updated 5 months ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Oct 15, 2025Updated 3 months ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆11Jun 10, 2019Updated 6 years ago
- NGS perl modules☆11Feb 4, 2026Updated last week
- ActiveDriverDB☆12May 1, 2023Updated 2 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆15Aug 22, 2025Updated 5 months ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 5 years ago
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 7 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- Main ricopili repo for public releases☆51Apr 8, 2025Updated 10 months ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆14Jul 24, 2025Updated 6 months ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated last year
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 7 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- Finding cryptic relationships to boost disease gene detection☆12May 31, 2023Updated 2 years ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 4 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 7 years ago
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Sep 22, 2023Updated 2 years ago
- Miscellaneous genomics tools and data structures☆15Jul 26, 2024Updated last year
- ☆11Dec 8, 2022Updated 3 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated last year
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Oct 15, 2025Updated 3 months ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 6 months ago
- Source code for the GWAS Diversity Monitor☆16Sep 1, 2025Updated 5 months ago
- genetic correlation between phenotypes in the UK biobank☆13Feb 22, 2024Updated last year
- This is the project for the TensorFlow on Flask presentation for PyBay☆10Jan 3, 2017Updated 9 years ago