okraus / DeepLoc
This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content microscopy data with deep learning"
☆50Updated 8 years ago
Alternatives and similar repositories for DeepLoc
Users that are interested in DeepLoc are comparing it to the libraries listed below
Sorting:
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆63Updated 4 years ago
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆40Updated last year
- Amino-Acid Sequence Annotation Predictor (ASAP)☆25Updated 5 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆29Updated 7 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 6 years ago
- This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.☆32Updated 7 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61Updated 8 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- DCell browser and gene deletion simulator☆123Updated 2 years ago
- CS273B Deep Learning for Genomics Course Materials☆33Updated 4 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆65Updated 4 years ago
- DSDE Deep Learning Club☆40Updated 6 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 7 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Integrative orthogonal non-negative matrix factorization☆31Updated 5 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Towards Gene Expression Convolutions using Gene Interaction Graphs☆74Updated 3 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 4 years ago
- NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chrom…☆27Updated 4 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago
- Deep learning for gene expression inference☆145Updated 6 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Deep neural networks for predicting CpG methylation☆146Updated 5 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 5 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- a python module to download Broad Bioimage Benchmark Collection images☆24Updated 6 years ago
- Source code of the paper "DeepGene: an advanced cancer type classifier based on deep learning and somatic point mutations"☆13Updated 7 years ago
- Understanding sequence conservation with deep learning☆20Updated 8 years ago