idekerlab / DCell
DCell browser and gene deletion simulator
☆122Updated 2 years ago
Alternatives and similar repositories for DCell:
Users that are interested in DCell are comparing it to the libraries listed below
- Model zoo for genomics☆166Updated 6 months ago
- Towards Gene Expression Convolutions using Gene Interaction Graphs☆74Updated 3 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆53Updated last year
- Kipoi's model zoo API☆235Updated 9 months ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆138Updated this week
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 5 years ago
- Training and evaluating a variational autoencoder for pan-cancer gene expression data☆165Updated 6 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 5 months ago
- ☆51Updated 4 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- TF MOtif Discovery from Importance SCOres☆133Updated last year
- ☆107Updated 6 years ago
- This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…☆50Updated 7 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 7 years ago
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆157Updated 8 years ago
- Deep learning for gene expression inference☆147Updated 5 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- ☆21Updated 6 years ago
- For anyone who are eager to applying deep learning in bioinformatics!☆122Updated 6 years ago
- This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…☆31Updated 4 years ago
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆109Updated 2 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆62Updated 4 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 5 years ago
- Deep neural networks for predicting CpG methylation☆143Updated 5 years ago
- Training and testing of DeepBind models.☆92Updated 9 years ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆130Updated 2 years ago
- Deep learning for single-cell transcript counts☆85Updated 4 years ago
- Subpopulation detection in high-dimensional single-cell data☆136Updated 4 years ago
- Protein function prediction using a variational autoencoder☆93Updated 6 years ago