Alternatives and similar repositories for dsde-deep-learning

Users that are interested in dsde-deep-learning are comparing it to the libraries listed below

• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 3 years ago
• kipoi / models
  Model zoo for genomics
  ☆173Updated last month
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆51Updated 2 years ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆54Updated 6 years ago
• uci-cbcl / FactorNet
  A deep learning package for predicting TF binding
  ☆42Updated 5 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 6 years ago
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 7 years ago
• QData / DeepChrome
  Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications
  ☆64Updated 4 years ago
• gmcvicker / genome
  Python library and scripts for retrieval and storage of genomics data in HDF5 format
  ☆27Updated 6 years ago
• greenelab / adage
  Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …
  ☆61Updated 9 years ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆47Updated 9 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated last month
• budach / pysster
  pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
  ☆86Updated 6 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆85Updated last year
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆50Updated 2 years ago
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆32Updated 5 years ago
• yifeng-li / DECRES
  Deep learning for identifying cis-regulatory elements and other applications
  ☆34Updated 9 years ago
• gagneurlab / MMSplice_MTSplice
  Tissue-specific variant effect predictions on splicing
  ☆43Updated 2 years ago
• uci-cbcl / DeepCons
  Understanding sequence conservation with deep learning
  ☆20Updated 8 years ago
• kundajelab / coda
  Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data
  ☆34Updated 8 years ago
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆41Updated 10 months ago
• kipoi / kipoiseq
  Standard set of data-loaders for training and making predictions for DNA sequence-based models.
  ☆83Updated last year
• QData / DeepMotif
  Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications
  ☆46Updated 6 years ago
• jpiper / pyDNase
  Python module for the easy handling and analysis of DNase-seq data
  ☆37Updated 6 years ago
• sbg / sevenbridges-python
  SevenBridges Python Api bindings
  ☆46Updated 11 months ago
• cgreene / awesome-deepbio
  A curated list of awesome deep learning applications in the field of computational biology
  ☆11Updated 9 years ago
• phenopolis / phenopolis
  An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data
  ☆33Updated 3 years ago
• Illumina / PrimateAI
  deep residual neural network for classifying the pathogenicity of missense mutations.
  ☆115Updated 4 years ago
• kipoi / kipoi
  Kipoi's model zoo API
  ☆240Updated last month
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆46Updated 5 years ago