broadinstitute / dsde-deep-learningView external linksLinks
DSDE Deep Learning Club
☆40Mar 28, 2019Updated 6 years ago
Alternatives and similar repositories for dsde-deep-learning
Users that are interested in dsde-deep-learning are comparing it to the libraries listed below
Sorting:
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Aug 7, 2018Updated 7 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Jan 9, 2020Updated 6 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Sep 12, 2017Updated 8 years ago
- ☆11Jun 23, 2017Updated 8 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 2 years ago
- Collection of notes and scripts related to NGS☆14Dec 31, 2025Updated last month
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Mar 15, 2023Updated 2 years ago
- Imputation pipeline for Open Humans☆14Updated this week
- The user can generate Molecular Tumor Board reports for TCGA samples☆15Mar 21, 2020Updated 5 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆34Jan 7, 2020Updated 6 years ago
- Parallel Genomic Analysis Toolkit☆14Feb 11, 2019Updated 7 years ago
- SolveBio Python bindings☆20Jan 21, 2026Updated 3 weeks ago
- Scripts to run several protocols to process and analyze Next-Generation Sequencing data☆18Aug 3, 2023Updated 2 years ago
- CS273B Deep Learning for Genomics Course Materials☆34Sep 9, 2020Updated 5 years ago
- Activity From Virtual Screening Code Repository☆23Aug 30, 2017Updated 8 years ago
- inferring sequence-structure motifs using deep learning☆40Aug 3, 2023Updated 2 years ago
- Tools for munging genomic data☆21Jul 9, 2019Updated 6 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Apr 4, 2022Updated 3 years ago
- THIS IS THE OLD REPO: Use this one instead: https://github.com/monarch-initiative/mondo-build☆17Feb 5, 2021Updated 5 years ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Sep 15, 2021Updated 4 years ago
- Understanding sequence conservation with deep learning☆20Mar 19, 2017Updated 8 years ago
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆27Apr 6, 2019Updated 6 years ago
- Bioinformatics learning (for high performance computing, big data, and machine learning)☆19Jun 8, 2017Updated 8 years ago
- Immunology Informatics - Big Data Analysis in Immunology - Tutorials☆24Sep 9, 2017Updated 8 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Apr 13, 2021Updated 4 years ago
- Extension to Theano for multi-GPU data parallelism☆20Sep 26, 2017Updated 8 years ago
- TCGA data acquisition and processing for Project Cognoma☆22Apr 19, 2018Updated 7 years ago
- Repository for the code for DeepATAC project presented at WCB workshop in ICML2017☆22Aug 9, 2017Updated 8 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 2 years ago
- Personalized Medicine: Redefining Cancer Treatment with deep learning☆24Nov 22, 2017Updated 8 years ago
- Genetics training camp☆21Sep 8, 2020Updated 5 years ago
- This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…☆50Apr 30, 2017Updated 8 years ago
- GWAS Catalog Ontology and Curation Infrastructure☆26Updated this week
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 2 years ago
- A simple neural network for calling het-/hom-variants from alignments of single molecule reads to a reference☆60Apr 27, 2018Updated 7 years ago
- ☆107May 16, 2018Updated 7 years ago
- DeepBio☆22May 16, 2016Updated 9 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆66Oct 24, 2020Updated 5 years ago