Alternatives and similar repositories for pop_gen_cnn

Users that are interested in pop_gen_cnn are comparing it to the libraries listed below

• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 5 years ago
• evoldoers / machineboss
  Bioinformatics Open Source Sequence machine
  ☆32Updated 2 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated last month
• RWilton / Arioc
  Arioc: GPU-accelerated DNA short-read alignment
  ☆70Updated 7 months ago
• brentp / pyfasta
  fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
  ☆87Updated 8 years ago
• nspies / genomeview
  An extensible python-based genomics visualization engine
  ☆145Updated 2 years ago
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 4 years ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆46Updated 9 years ago
• widdowquinn / Teaching-IBioIC-Intro-to-Bioinformatics
  Course materials for the IBioIC Introduction to Bioinformatics training course
  ☆12Updated 8 years ago
• biointec / jabba
  Read error correction tool for PacBio data
  ☆12Updated last year
• bcgsc / orca
  Genomics Research Container Architecture
  ☆48Updated 6 years ago
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆76Updated 3 weeks ago
• NCBI-Hackathons / TheHumanPangenome
  A Strategy for Building and Using a Human Reference Pangenome
  ☆71Updated 5 years ago
• lpantano / seqcluster
  small RNA analysis from NGS data
  ☆37Updated last year
• MariaNattestad / SplitThreader
  SplitThreader has moved into Ribbon!
  ☆67Updated last year
• pb-jchin / VariantNET
  A simple neural network for calling het-/hom-variants from alignments of single molecule reads to a reference
  ☆60Updated 7 years ago
• amarallab / NullSeq
  Creates Random Coding Sequences with specified GC content and Amino Acid usage
  ☆10Updated 3 years ago
• eth-sri / astarix
  AStarix: Fast and Optimal Sequence-to-Graph Aligner
  ☆74Updated 4 years ago
• kr-colab / popvae
  genotype dimensionality reduction with a VAE
  ☆48Updated 9 months ago
• NikolayOskolkov / DeepLearningAncientDNA
  Here I show how to use Convolutional Neural Networks (CNNs) for Ancient DNA analysis
  ☆15Updated 6 years ago
• roblanf / sarscov2phylo
  Global phylogenies of SARS-CoV-2 sequences
  ☆85Updated 2 years ago
• NeuroCSUT / ViraMiner
  CNN based classifier for detecting viral sequences among metagenomic contigs
  ☆34Updated 5 years ago
• lpantano / seqbuster
  pipeline for the analysis of small RNA data
  ☆14Updated 6 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆66Updated 9 months ago
• foerstner-lab / READemption
  A pipeline for the computational evaluation of RNA-Seq data
  ☆40Updated last year
• COMBINE-lab / pufferfish
  An efficient index for the colored, compacted, de Bruijn graph
  ☆110Updated last year
• diazale / 1KGP_dimred
  Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.
  ☆20Updated 5 years ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆54Updated 6 years ago
• kundajelab / training_camp
  Genetics training camp
  ☆21Updated 5 years ago
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆51Updated 2 years ago