Alternatives and similar repositories for pop_gen_cnn:

Users that are interested in pop_gen_cnn are comparing it to the libraries listed below

• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆43Updated 5 years ago
• evoldoers / machineboss
  Bioinformatics Open Source Sequence machine
  ☆33Updated last year
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 7 months ago
• nspies / genomeview
  An extensible python-based genomics visualization engine
  ☆144Updated last year
• kr-colab / popvae
  genotype dimensionality reduction with a VAE
  ☆44Updated last month
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆65Updated last month
• nlapier2 / Metalign
  Metalign: efficient alignment-based metagenomic profiling via containment min hash
  ☆33Updated last year
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 3 years ago
• kundajelab / training_camp
  Genetics training camp
  ☆21Updated 4 years ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 4 years ago
• epiviz / epiviz
  EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…
  ☆69Updated 2 years ago
• widdowquinn / Teaching-IBioIC-Intro-to-Bioinformatics
  Course materials for the IBioIC Introduction to Bioinformatics training course
  ☆12Updated 7 years ago
• IGS / Chiron
  Tools and utilities for running Dockerized metagenomics tools in the Cloud
  ☆22Updated 6 years ago
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆50Updated 2 years ago
• foerstner-lab / READemption
  A pipeline for the computational evaluation of RNA-Seq data
  ☆37Updated 7 months ago
• MariaNattestad / SplitThreader
  SplitThreader has moved into Ribbon!
  ☆67Updated 7 months ago
• PATRIC3 / mic_prediction
  Code for doing MIC predictions on genomes
  ☆36Updated 5 years ago
• RWilton / Arioc
  Arioc: GPU-accelerated DNA short-read alignment
  ☆69Updated 3 months ago
• marcus1487 / nanoraw
  Genome guided re-segmention and visualization for raw nanopore sequencing data.
  ☆46Updated 6 years ago
• Oshlack / STRetch
  Method for detecting STR expansions from short-read sequencing data
  ☆62Updated 3 years ago
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆73Updated last month
• NCBI-Hackathons / TheHumanPangenome
  A Strategy for Building and Using a Human Reference Pangenome
  ☆70Updated 4 years ago
• brentp / pyfasta
  fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
  ☆87Updated 7 years ago
• amarallab / NullSeq
  Creates Random Coding Sequences with specified GC content and Amino Acid usage
  ☆9Updated 2 years ago
• aquaskyline / Skyhawk
  An Artificial Neural Network-based discriminator for validating clinically significant genomic variants
  ☆35Updated last year
• brentp / hts-python
  pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
  ☆49Updated 8 years ago
• NeuroCSUT / ViraMiner
  CNN based classifier for detecting viral sequences among metagenomic contigs
  ☆33Updated 4 years ago
• wwood / OrfM
  simple and not slow ORF caller
  ☆21Updated 6 years ago
• moonso / vcf_parser
  Simple vcf parser, based on PyVCF
  ☆46Updated 6 years ago
• acg-team / tral
  Tandem Repeat Annotation Library
  ☆25Updated 2 years ago