☆81Dec 19, 2023Updated 2 years ago
Alternatives and similar repositories for pop_gen_cnn
Users that are interested in pop_gen_cnn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- feature-based deep learning for the identification of selective sweeps☆60Mar 31, 2026Updated 7 months ago
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 8 years ago
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 5 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆14May 1, 2019Updated 7 years ago
- genotype dimensionality reduction with a VAE☆51Mar 11, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆28Jul 8, 2022Updated 4 years ago
- Tools and Utilities for msmc and msmc2☆51Jan 23, 2026Updated 9 months ago
- Estimation of population genetic parameters using deep learning☆29Apr 2, 2025Updated last year
- ☆16Mar 20, 2023Updated 3 years ago
- predicting DFE and alpha from polymorphism data☆29Oct 4, 2018Updated 8 years ago
- Estimate recombination rates from population genetic data☆72Jun 10, 2020Updated 6 years ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- ☆34Jan 5, 2023Updated 3 years ago
- Analysis of inference methods on standard population models☆25Dec 3, 2021Updated 4 years ago
- Simulation of Epistasis Local adaptation, with Ancestry and Mate choice☆11Apr 22, 2023Updated 3 years ago
- Perform GWAS with gemma in a simple pipeline☆28Apr 26, 2025Updated last year
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 8 months ago
- Two locus likelihoods and ARGs under changing population size☆14Dec 18, 2025Updated 10 months ago
- A library of standard population genetic models☆145Updated this week
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆27Sep 14, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Updated this week
- Software for detecting introgression using supervised machine learning☆22Nov 21, 2022Updated 3 years ago
- deep learning prediction of geographic location from individual genome sequences☆55Jan 20, 2025Updated last year
- intro to programming for IE2 evolution students☆12Jan 31, 2024Updated 2 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 3 years ago
- A method to detect polygenic adaptation in an admixture graph☆12Feb 22, 2018Updated 8 years ago
- ☆12May 13, 2024Updated 2 years ago
- PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies☆10Jun 14, 2026Updated 4 months ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14Dec 3, 2024Updated last year
- Utilities for analyzing next generation sequencing data☆17Sep 28, 2018Updated 8 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 3 years ago
- ☆26Aug 10, 2021Updated 5 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Mar 19, 2026Updated 7 months ago
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago