gmcvicker / genome
Python library and scripts for retrieval and storage of genomics data in HDF5 format
☆26Updated 6 years ago
Alternatives and similar repositories for genome:
Users that are interested in genome are comparing it to the libraries listed below
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last week
- A software for the multispecies design of CRISPR/Cas9 libraries☆35Updated 2 years ago
- Core functionality of the CGAT code☆33Updated 3 months ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 4 years ago
- Biological Graphic tool in Python☆34Updated 4 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 7 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Efficient handling of FASTQ files from Python☆51Updated 8 months ago
- Tools for visualizing genomics data☆67Updated 3 years ago
- See the main fork of this repository here >>>☆38Updated 2 months ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Computational biology utility scripts☆19Updated 3 weeks ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- ☆41Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago