Python library and scripts for retrieval and storage of genomics data in HDF5 format
☆27Apr 6, 2019Updated 7 years ago
Alternatives and similar repositories for genome
Users that are interested in genome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Swiss army knife for genome projects☆15Aug 13, 2013Updated 13 years ago
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆17Jul 13, 2018Updated 8 years ago
- A complete Snakemake pipeline for detecting allele specific expression in RNA-seq☆10Jul 10, 2021Updated 5 years ago
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 7 years ago
- An open-source tool to find and classify phenotypic correlations for variations in whole genomes. (For deployment, use the production bra…☆22May 31, 2010Updated 16 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A new web-based HTML5 genome browser. Genome Maps can also browse BAM and VCFs files among other formats.☆27Sep 24, 2013Updated 13 years ago
- TRAPPIST: Totally Rad Analysis Pipelines Python Informatics Super Tool (actually, a python-based genomics analysis toolbox)☆14Jan 25, 2018Updated 8 years ago
- My repo for code useful in quantitative genetics and miscellaneous scripts.☆11Feb 8, 2026Updated 8 months ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Mar 18, 2018Updated 8 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Aug 7, 2018Updated 8 years ago
- python access to UCSC genomes database☆138Aug 27, 2020Updated 6 years ago
- Biological Graphic tool in Python☆34May 14, 2020Updated 6 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Nov 7, 2016Updated 9 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- some general useful python tools for genomics☆20Aug 12, 2020Updated 6 years ago
- High throughput, pain-free big data pipelines.☆29Mar 11, 2017Updated 9 years ago
- My fork of the official Biopython repository, used for experimental branches etc☆20Oct 21, 2026Updated 2 weeks ago
- bacterial genome annotation system☆13Dec 11, 2014Updated 11 years ago
- Determines if a genome is immune to norovirus (rs601338)☆15Apr 19, 2015Updated 11 years ago
- Solutions to Algorithms for DNA Sequencing☆11Aug 1, 2015Updated 11 years ago
- Cloud-scale differential expression for RNA-seq☆15May 23, 2023Updated 3 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 6 years ago
- Numerical Encoding for Human Genetic Variants☆43Jun 8, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code and Data for Generative modeling for AAV design☆11Nov 13, 2023Updated 2 years ago
- Analysis of Ebola virus genomes☆17May 18, 2015Updated 11 years ago
- Automated cell tracking package for MATLAB☆11Feb 21, 2019Updated 7 years ago
- Online tool for comparing prices and feasibility of DNA synthesis☆22Mar 2, 2023Updated 3 years ago
- Genome Annotation for the Masses☆36Jul 9, 2017Updated 9 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- ☆11Feb 16, 2021Updated 5 years ago
- ☆11Dec 3, 2013Updated 12 years ago
- a guideRNA database generation tool☆21Mar 3, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- "Arduino for Biologists" Nanocourse☆13Dec 8, 2025Updated 10 months ago
- One stop MIP design and analysis☆25Sep 30, 2020Updated 6 years ago
- A repository for my solutions to problems from - http://www.rosalind.info☆23May 1, 2021Updated 5 years ago
- DSDE Deep Learning Club☆40Mar 28, 2019Updated 7 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆15May 21, 2014Updated 12 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆56Nov 27, 2012Updated 13 years ago
- Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.☆83Dec 10, 2020Updated 5 years ago