Python library and scripts for retrieval and storage of genomics data in HDF5 format
☆27Apr 6, 2019Updated 7 years ago
Alternatives and similar repositories for genome
Users that are interested in genome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆17Jul 13, 2018Updated 7 years ago
- Genetic visualization application using Python/Flask, Angular, d3, and 23andMe authentication☆14Aug 5, 2016Updated 9 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Aug 7, 2018Updated 7 years ago
- A new web-based HTML5 genome browser. Genome Maps can also browse BAM and VCFs files among other formats.☆27Sep 24, 2013Updated 12 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Automated cell tracking package for MATLAB☆11Feb 21, 2019Updated 7 years ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 5 years ago
- DeepMosaic is a deep-learning-based mosaic single nucleotide classification tool without the need of matched control information.☆52Dec 6, 2025Updated 4 months ago
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 8 years ago
- DSDE Deep Learning Club☆40Mar 28, 2019Updated 7 years ago
- One stop MIP design and analysis☆24Sep 30, 2020Updated 5 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Jul 20, 2018Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- Online tool for comparing prices and feasibility of DNA synthesis☆22Mar 2, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Solutions to Algorithms for DNA Sequencing☆11Aug 1, 2015Updated 10 years ago
- Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.☆83Dec 10, 2020Updated 5 years ago
- A repository for my solutions to problems from - http://www.rosalind.info☆23May 1, 2021Updated 4 years ago
- ☆22Aug 8, 2022Updated 3 years ago
- ☆31Jul 8, 2025Updated 9 months ago
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- Degenerate Codon Design☆13Feb 13, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Feb 20, 2014Updated 12 years ago
- Code associated with: AutoStepfinder: A fast and automated step detection method for single-molecule analysis Luuk Loeff, Jacob W J Kerss…☆11Jun 12, 2024Updated last year
- An interactive web application tool that enables big data visualization of the 136k+ UK Road Accidents reported during 2016.☆10Oct 19, 2022Updated 3 years ago
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 5 years ago
- Theano-based Deep Learning library (convnets, recurrent neural networks, and more).☆14Aug 2, 2017Updated 8 years ago
- Temporal Pathway Synthesizer☆17Jun 28, 2024Updated last year
- Distributed machine learning platform☆13Aug 20, 2015Updated 10 years ago
- Fetchs google scholar queries and outputs info or bibtex data☆34Feb 18, 2014Updated 12 years ago
- FlashFry: The rapid CRISPR target site characterization tool☆81Jun 12, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- [DEPRECATED] An R package for Google Genomics API queries.☆45Mar 15, 2023Updated 3 years ago
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61May 26, 2016Updated 9 years ago
- qPCR analysis tools for Python☆19Feb 21, 2014Updated 12 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Oct 9, 2017Updated 8 years ago
- Docker container for Tripal☆10Mar 29, 2022Updated 4 years ago
- Data Processing, Modeling and Analysis scripts for CRISPR-inDelphi☆14Apr 21, 2023Updated 2 years ago