Python library and scripts for retrieval and storage of genomics data in HDF5 format
☆27Apr 6, 2019Updated 7 years ago
Alternatives and similar repositories for genome
Users that are interested in genome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆17Jul 13, 2018Updated 7 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Aug 7, 2018Updated 7 years ago
- Zoish is a Python package that streamlines machine learning by leveraging SHAP values for feature selection and interpretability, making …☆13Sep 26, 2025Updated 9 months ago
- A new web-based HTML5 genome browser. Genome Maps can also browse BAM and VCFs files among other formats.☆27Sep 24, 2013Updated 12 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 8 years ago
- DeepMosaic is a deep-learning-based mosaic single nucleotide classification tool without the need of matched control information.☆57May 21, 2026Updated last month
- DSDE Deep Learning Club☆40Mar 28, 2019Updated 7 years ago
- a guideRNA database generation tool☆18Mar 3, 2025Updated last year
- Scripts supporting identification of genomic features affecting survival time in cancer☆14Dec 6, 2018Updated 7 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Jul 20, 2018Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- Online tool for comparing prices and feasibility of DNA synthesis☆22Mar 2, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Solutions to Algorithms for DNA Sequencing☆11Aug 1, 2015Updated 10 years ago
- Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.☆83Dec 10, 2020Updated 5 years ago
- A repository for my solutions to problems from - http://www.rosalind.info☆23May 1, 2021Updated 5 years ago
- ☆22Aug 8, 2022Updated 3 years ago
- ☆34Jul 8, 2025Updated 11 months ago
- Python biomart API☆69Jun 17, 2023Updated 3 years ago
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Feb 20, 2014Updated 12 years ago
- Code associated with: AutoStepfinder: A fast and automated step detection method for single-molecule analysis Luuk Loeff, Jacob W J Kerss…☆12Jun 12, 2024Updated 2 years ago
- iOS port for serval chat app☆11Nov 15, 2018Updated 7 years ago
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 5 years ago
- Theano-based Deep Learning library (convnets, recurrent neural networks, and more).☆14Aug 2, 2017Updated 8 years ago
- Temporal Pathway Synthesizer☆17Jun 28, 2024Updated 2 years ago
- FlashFry: The rapid CRISPR target site characterization tool☆82Jun 12, 2024Updated 2 years ago
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61May 26, 2016Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆32Oct 9, 2017Updated 8 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Face-meltingly fast, thread-safe, marshalable, unionable, probability- and optimal-size-calculating Bloom filter in go☆32Jun 13, 2025Updated last year
- Convolutional neural network analysis for predicting DNA sequence activity.☆267Sep 14, 2020Updated 5 years ago
- All design files and scripts necessary for the construction and use of the optoPlate-96☆11Apr 28, 2022Updated 4 years ago
- Software for performing UDiTaS sequencing analysis.☆15Dec 22, 2022Updated 3 years ago
- BUS format specification☆13Nov 18, 2019Updated 6 years ago