Python library and scripts for retrieval and storage of genomics data in HDF5 format
☆27Apr 6, 2019Updated 7 years ago
Alternatives and similar repositories for genome
Users that are interested in genome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Swiss army knife for genome projects☆15Aug 13, 2013Updated 12 years ago
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆17Jul 13, 2018Updated 8 years ago
- A complete Snakemake pipeline for detecting allele specific expression in RNA-seq☆10Jul 10, 2021Updated 5 years ago
- Code for Genomes Unzipped☆20Nov 22, 2010Updated 15 years ago
- An open-source tool to find and classify phenotypic correlations for variations in whole genomes. (For deployment, use the production bra…☆22May 31, 2010Updated 16 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- TRAPPIST: Totally Rad Analysis Pipelines Python Informatics Super Tool (actually, a python-based genomics analysis toolbox)☆14Jan 25, 2018Updated 8 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Mar 18, 2018Updated 8 years ago
- Genetic visualization application using Python/Flask, Angular, d3, and 23andMe authentication☆14Aug 5, 2016Updated 9 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Aug 7, 2018Updated 7 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Nov 7, 2016Updated 9 years ago
- python access to UCSC genomes database☆138Aug 27, 2020Updated 5 years ago
- Determines if a genome is immune to norovirus (rs601338)☆15Apr 19, 2015Updated 11 years ago
- Code and Data for Generative modeling for AAV design☆10Nov 13, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cloud-scale differential expression for RNA-seq☆15May 23, 2023Updated 3 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23May 14, 2025Updated last year
- Automated cell tracking package for MATLAB☆11Feb 21, 2019Updated 7 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 6 years ago
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 8 years ago
- requirements, examples, and tests for expression matrix file formats☆22Sep 18, 2018Updated 7 years ago
- Online tool for comparing prices and feasibility of DNA synthesis☆22Mar 2, 2023Updated 3 years ago
- DSDE Deep Learning Club☆40Mar 28, 2019Updated 7 years ago
- One stop MIP design and analysis☆25Sep 30, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DeepMosaic is a deep-learning-based mosaic single nucleotide classification tool without the need of matched control information.☆56May 21, 2026Updated 2 months ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Jul 20, 2018Updated 8 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆56Nov 27, 2012Updated 13 years ago
- Bioconductor package "polyester", devel version. RNA-seq read simulator.☆99Sep 14, 2021Updated 4 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- a guideRNA database generation tool☆21Mar 3, 2025Updated last year
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.☆83Dec 10, 2020Updated 5 years ago
- ☆35Jul 8, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Analyzes whole genome sequencing data for gene-editing verification☆12Jul 3, 2026Updated 3 weeks ago
- Python biomart API☆69Jun 17, 2023Updated 3 years ago
- Biological Graphic tool in Python☆34May 14, 2020Updated 6 years ago
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆25Sep 5, 2016Updated 9 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago