Alternatives and similar repositories for deep-rules

Users that are interested in deep-rules are comparing it to the libraries listed below

• kipoi / kipoi
  Kipoi's model zoo API
  ☆237Updated last year
• kipoi / models
  Model zoo for genomics
  ☆168Updated last year
• BIMSBbioinfo / janggu
  Deep learning infrastructure for genomics
  ☆258Updated 3 years ago
• budach / pysster
  pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
  ☆86Updated 5 years ago
• FunctionLab / selene
  a framework for training sequence-level deep learning networks
  ☆384Updated 7 months ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• microsoft / Elevation
  End-to-end guide design for CRISPR/Cas9 with machine learning
  ☆134Updated 2 years ago
• Bjoux2 / DeepLearning-in-Bioinformatics
  For anyone who are eager to applying deep learning in bioinformatics!
  ☆124Updated 6 years ago
• gwh120104 / deepmetabolism
  DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing
  ☆31Updated 8 years ago
• vanessajurtz / lasagne4bio
  ☆107Updated 7 years ago
• daquang / YAMDA
  Yet Another Motif Discovery Algorithm
  ☆53Updated 6 years ago
• kundajelab / dragonn
  A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
  ☆261Updated 2 years ago
• pimentel / deep_learning_papers
  A place to collect papers that are related to deep learning and computational biology
  ☆187Updated 9 years ago
• idekerlab / DCell
  DCell browser and gene deletion simulator
  ☆124Updated 2 years ago
• jmschrei / avocado
  Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…
  ☆119Updated 3 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 3 years ago
• dhbradshaw / ml-for-genomics
  Lists open source machine learning projects solving genomic or molecular biology problems.
  ☆29Updated 8 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆43Updated 5 years ago
• QData / DeepMotif
  Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications
  ☆46Updated 6 years ago
• cangermueller / deepcpg
  Deep neural networks for predicting CpG methylation
  ☆148Updated 5 years ago
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• greenelab / covid19-review
  A collaborative review of the emerging COVID-19 literature. Join the chat here:
  ☆117Updated last year
• BIMSBbioinfo / compgen2021
  ☆77Updated 3 years ago
• greenelab / BioBombe
  BioBombe: Sequentially compressed gene expression features enhances biological signatures
  ☆66Updated last year
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆32Updated 4 years ago
• SBRG / Protein_ML
  Machine learning workflows for analyzing high-throughput protein data
  ☆26Updated 8 years ago
• unlearnai / genemunge
  Tools for munging genomic data
  ☆21Updated 6 years ago
• pnpnpn / dna2vec
  dna2vec: Consistent vector representations of variable-length k-mers
  ☆189Updated 3 years ago
• abidlabs / deep-learning-genomics-primer
  Contains files for the deep learning in genomics primer.
  ☆265Updated 6 years ago
• grokkaine / biopycourse
  Python short course for graduates in biology and biochemistry
  ☆17Updated 4 years ago