micans / mclLinks
MCL, the Markov Cluster algorithm, also known as Markov Clustering, is a method and program for clustering weighted or simple networks, a.k.a. graphs.
☆100Updated last month
Alternatives and similar repositories for mcl
Users that are interested in mcl are comparing it to the libraries listed below
Sorting:
- ☆79Updated last month
- Fast and flexible ORF finder☆73Updated 3 years ago
- Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly☆120Updated this week
- Config files used to define parameters specific to compute environments at different Institutions☆102Updated this week
- Sequana: a set of Snakemake NGS pipelines☆146Updated 4 months ago
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆101Updated last week
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆45Updated last year
- Neural networks for microbe-metabolite interaction analysis☆121Updated 2 years ago
- Efficient target prediction incorporating accessibility of interaction sites☆48Updated 5 months ago
- Making bioinformatics fun again☆73Updated last month
- Public repository for ShapeMapper 2 releases☆37Updated 7 months ago
- MeShClust: an intelligent tool for clustering DNA sequences☆38Updated 3 years ago
- Tools for manipulating biological data, particularly multiple sequence alignments☆157Updated 10 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆129Updated 2 weeks ago
- a tool for inferring species tree from sequencing reads☆150Updated 5 months ago
- Python API for comprehensive GWAS analysis using GEMMA☆99Updated last year
- Variant calling tool for long-read sequencing data☆111Updated 4 months ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆115Updated last week
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆86Updated last year
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆95Updated 2 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆107Updated last year
- What should perfect bioinformatic tools be like?☆128Updated 2 months ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆105Updated last month
- ClairS - a deep-learning method for long-read somatic small variant calling☆86Updated last week
- Align multiple amino acid or nucleotide sequences.☆61Updated 4 years ago
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆121Updated last year
- Analysis of Chromosome Conformation Capture data (Hi-C)☆99Updated last week
- Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)☆46Updated 2 years ago
- Deep learning framework for SV calling and genotyping☆108Updated last year
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year