sbslee / fucLinks
Frequently used commands in bioinformatics
☆58Updated last year
Alternatives and similar repositories for fuc
Users that are interested in fuc are comparing it to the libraries listed below
Sorting:
- Somatic structural variant caller for long-read data☆85Updated last month
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated last week
- Tip and tricks for BAM files☆86Updated 7 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- Powerful statistics for VCF files☆72Updated 3 weeks ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- long read RNA-seq quantification☆93Updated last month
- BAM Statistics, Feature Counting and Annotation☆152Updated last week
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 9 months ago
- TIDDIT - structural variant calling☆77Updated 8 months ago
- Human reference genome analysis sets☆56Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 7 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆97Updated this week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆109Updated 3 months ago
- Fast and accurate coordinate conversion between assemblies☆117Updated 2 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆50Updated 3 weeks ago
- The Flexible Demultiplexer☆37Updated 3 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 3 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆145Updated 3 months ago
- ☆52Updated 2 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆75Updated last month
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- Drosophila transposable element canonical sequences☆29Updated 3 years ago