GPZ-Bioinfo / tmapLinks
topological data analysis of population-scale microbiomes
☆31Updated 2 years ago
Alternatives and similar repositories for tmap
Users that are interested in tmap are comparing it to the libraries listed below
Sorting:
- ☆25Updated 5 years ago
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆21Updated 2 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 2 years ago
- ☆14Updated last year
- Web-based software for visualization of molecular maps in 2D and 3D☆27Updated 2 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆35Updated 2 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆34Updated 2 years ago
- ☆15Updated 9 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- Prediction fitness of leaves on a genealogical tree☆12Updated 10 years ago
- State-of-the-art ab initio prediction of 1D protein structure annotations☆14Updated 4 years ago
- A graphical interface for sklearn classification to introduce machine learning to biologists☆12Updated 6 months ago
- bioinformatics visualization tools with pyviz/bokeh☆20Updated 2 years ago
- ☆11Updated 6 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 4 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆18Updated 5 years ago
- Pyro models of SARS-CoV-2 variants☆77Updated last year
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆24Updated last month
- Automated synthetic microbial Community Design☆13Updated 4 years ago
- ☆16Updated 10 months ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆65Updated 4 years ago
- High-level analysis package for (bio-)informatics☆11Updated last year
- Network Visualization using both GUI and Programming☆29Updated 4 months ago
- Network annotation visualization☆18Updated 4 months ago
- FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…☆14Updated 4 months ago
- ☆24Updated 3 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Updated 3 years ago
- Interactive tutorials for using scikit-bio in biological research☆27Updated last month
- Python package to query and analyse UniProt☆25Updated 5 years ago