Alternatives and similar repositories for tmap:

Users that are interested in tmap are comparing it to the libraries listed below

• knightlab-analyses / multiomic-cooccurrences
  ☆25Updated 4 years ago
• mircare / Brewery
  State-of-the-art ab initio prediction of 1D protein structure annotations
  ☆14Updated 3 years ago
• canc1993 / cheshire-gapfilling
  ☆20Updated last year
• biocore / qurro
  Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
  ☆33Updated 2 years ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆26Updated 6 years ago
• ThieleLab / CodeBase
  Code depository for papers
  ☆20Updated last month
• ucl-cssb / AutoCD
  Automated synthetic microbial Community Design
  ☆13Updated 3 years ago
• lichen-lab / MDeep
  ☆14Updated 4 years ago
• mendessoares / MMinte
  ☆16Updated 2 years ago
• biocore / gemelli
  Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…
  ☆78Updated 3 months ago
• borenstein-lab / microbiome-metabolome-curated-data
  ☆61Updated 3 months ago
• zhouhj1994 / LinDA
  ☆35Updated last year
• RabadanLab / scTDA
  An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
  ☆7Updated 7 years ago
• PavlopoulosLab / NORMA
  Network annotation visualization
  ☆17Updated 2 years ago
• widdowquinn / 2018-03-06-ibioic
  Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.
  ☆20Updated 6 years ago
• SegataLab / metaml
  ☆27Updated 4 months ago
• pnnl / mercat
  MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
  ☆18Updated 2 years ago
• biocore / mmvec
  Neural networks for microbe-metabolite interaction analysis
  ☆118Updated 2 years ago
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆35Updated 7 years ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆77Updated 2 months ago
• meringlab / FlashWeave.jl
  Inference of microbial interaction networks from large-scale heterogeneous abundance data
  ☆76Updated 7 months ago
• tlawrence3 / amPEPpy
  ☆24Updated last year
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆20Updated 2 months ago
• biocore / BIRDMAn
  Bayesian Inferential Regression for Differential Microbiome Analysis
  ☆22Updated last year
• jlugomar / longitudinal_microbiome_analysis_public
  ☆17Updated 3 years ago
• PedroMTQ / UniFuncNet
  A multi-reference network annotation tool to support omics analysis
  ☆12Updated 2 years ago
• zwang-bioinformatics / GOGO
  An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms
  ☆17Updated 4 years ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆38Updated last week
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆26Updated 6 years ago
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated last year