topological data analysis of population-scale microbiomes
☆32Jan 27, 2023Updated 3 years ago
Alternatives and similar repositories for tmap
Users that are interested in tmap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python functions to compute multiparameter persistence landscapes from a RIVET file☆14Jul 13, 2024Updated last year
- A collection of topological data analysis links, frameworks, libraries and software. Inspired by awesome projects line.☆19Aug 7, 2024Updated last year
- an R package to biotype a community☆14Oct 19, 2021Updated 4 years ago
- Microbiome Analysis Plotting and Visualization☆12Mar 23, 2026Updated 2 weeks ago
- Miscellaneous scripts☆24Sep 7, 2016Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Topological Data Analysis Routines☆150Updated this week
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆83May 14, 2019Updated 6 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Jan 22, 2020Updated 6 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆32Aug 23, 2022Updated 3 years ago
- This repository is for topologic and geometric data analysis.☆13Jul 2, 2022Updated 3 years ago
- Advanced metagenomic Sequence Analysis in R☆15Aug 17, 2018Updated 7 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Nov 23, 2022Updated 3 years ago
- Microbiome analysis☆55Mar 26, 2026Updated 2 weeks ago
- A graph visualisation tool targeted at persistent homology applications.☆12Jul 28, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- A collection of utilities for working with next generation (MPS) sequencing data in Groovy☆15Mar 2, 2026Updated last month
- raw data from tax-credit project☆14Sep 19, 2019Updated 6 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆104Sep 17, 2022Updated 3 years ago
- A tool for agile functional analysis of shotgun metagenomic data☆24Sep 15, 2024Updated last year
- Detecting critical transitions in financial networks with topological data analysis.☆16Mar 12, 2019Updated 7 years ago
- Climate change is a controversial topic of debate, where many of us do not believe in anthropogenic climate change. Because its consequen…☆12Sep 20, 2022Updated 3 years ago
- Software demonstrations for a course on Topological Data Analysis.☆12Mar 26, 2021Updated 5 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Distributed dynamic process model (DDPM) is a bidirectional coupling eco-hydrological model for (but not limited to) steppe inland river …☆10Jul 9, 2025Updated 9 months ago
- Git mirror of Bioconductor SRAdb package☆23Feb 20, 2018Updated 8 years ago
- Topological Data Analysis of a Financial Time Series for insights from Landscapes for detecting Financial Crashes☆12Mar 14, 2018Updated 8 years ago
- A repository for storing code and data related to a systematic comparison of short read taxonomy assignment tools☆16Oct 11, 2017Updated 8 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- Topological Data Analysis for Power System Contingencies☆11Sep 17, 2020Updated 5 years ago
- Fast Computation of Zigzag Persistence☆14Dec 9, 2023Updated 2 years ago
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 4 years ago
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- A newly developed metabolic modeling pipeline, SuperCC, which could simulate the performances of different microbiomes.☆26Nov 21, 2025Updated 4 months ago
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 5 years ago
- ☆78Oct 16, 2024Updated last year
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago
- Topological Data Analysis on Convolutional Neural Network activations☆12Sep 23, 2016Updated 9 years ago
- Coupled model of plant nitrogen demand and rhizosphere carbon allocation (FUN) and soil SOM cycling (CORPSE)☆10May 24, 2017Updated 8 years ago
- some papers about TDA☆13May 18, 2022Updated 3 years ago