Counting k-mers in massive datasets
☆13Nov 22, 2016Updated 9 years ago
Alternatives and similar repositories for streamcount
Users that are interested in streamcount are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 8 years ago
- Library for Reading Bioinformatic Sequence Data in C☆14Nov 7, 2016Updated 10 years ago
- dynamic-updateable-index☆11Nov 10, 2015Updated 10 years ago
- FM-index representation of a de Bruijn graph☆27Aug 7, 2017Updated 9 years ago
- ☆19Nov 2, 2018Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆10Sep 28, 2026Updated last month
- Go implementation of ntHash☆20Sep 16, 2021Updated 5 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Sep 3, 2026Updated 2 months ago
- BWT-based index for graphs☆72Aug 19, 2026Updated 2 months ago
- libstrbuf: A powerful string library for C☆18Oct 15, 2016Updated 10 years ago
- Make SVG figures out of the Burrows-Wheeler Matrix and various auxiliary text-space and BWT-space structures☆12Oct 14, 2025Updated last year
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 5 months ago
- ☆15Apr 6, 2016Updated 10 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Simulate mutations in genomes☆15Jun 15, 2020Updated 6 years ago
- Skip-mer tools☆10Sep 4, 2021Updated 5 years ago
- ☆25May 21, 2021Updated 5 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 7 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Mar 7, 2019Updated 7 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Reproducible Phylogenomics☆22Jun 28, 2016Updated 10 years ago
- Incremental construction of FM-index for DNA sequences☆72Jun 12, 2024Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- Teaching modules for Human Genome Variation Lab.☆22Jun 6, 2025Updated last year
- indel haplotype visualization on the command line from BAM files☆12Mar 12, 2014Updated 12 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- ☆36Aug 13, 2020Updated 6 years ago
- The 3rd incarnation of the Wise package for sequence analysis☆23Jun 19, 2014Updated 12 years ago
- Pilot to work with dynamic visualization by using python☆59Mar 26, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PROJECT DEPRECATED! Instead see http://flowbase.org and http://scipipe.org for libraries built on this pattern☆15May 12, 2017Updated 9 years ago
- Write-once-read-many table for large datasets.☆27Oct 5, 2023Updated 3 years ago
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- A demo of the Python C API for CodeMonkeys☆20Jun 17, 2018Updated 8 years ago
- Fast and memory-efficient sequencing error corrector☆96Jan 4, 2026Updated 10 months ago
- Design capture probes☆10Apr 28, 2025Updated last year
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago