Alternatives and similar repositories for nthash

Users that are interested in nthash are comparing it to the libraries listed below

• Malfoy / Miekki
  Minhash Index Extended to Knead Kmer Intersection
  ☆11Updated 5 years ago
• jteutenberg / downpore
  Suite of tools for use in genome assembly and consensus. Work in progress.
  ☆31Updated 4 years ago
• pantsing / flylsh
  A Brand New LSH: The fly’s olfactory circuits algorithm
  ☆11Updated 7 years ago
• shenwei356 / bwt
  Burrows-Wheeler Transform and FM-index in golang
  ☆20Updated 2 years ago
• ready-steady / hdf5
  Reader and writer of HDF5 files
  ☆18Updated 8 years ago
• biogo / examples
  example applications built using bíogo
  ☆18Updated 4 years ago
• dnbaker / bonsai
  Bonsai: Fast, flexible taxonomic analysis and classification
  ☆71Updated last year
• brentp / irelate
  Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang
  ☆47Updated 5 years ago
• grailbio / bio
  Bioinformatic infrastructure libraries
  ☆79Updated 5 years ago
• vgteam / xg-old
  succinct labeled graphs with collections and paths
  ☆15Updated 6 years ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated 8 months ago
• seqan / needle
  A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences
  ☆14Updated this week
• jaudoux / kamix
  Index and query k-mer matrices in BGZF
  ☆12Updated 7 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• SamStudio8 / hansel
  A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence
  ☆17Updated 4 years ago
• GuillaumeHolley / BloomFilterTrie
  An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.
  ☆44Updated 3 years ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆13Updated 9 years ago
• pbenner / gonetics
  Go / Golang Bioinformatics Library
  ☆45Updated last year
• csirac / dynamicDBG
  Practical Dynamic de Bruijn Graphs
  ☆18Updated 5 years ago
• biogo / hts
  biogo high throughput sequencing repository
  ☆130Updated 2 months ago
• wormtable / wormtable
  Write-once-read-many table for large datasets.
  ☆27Updated 2 years ago
• MG-RAST / AWE
  workflow and resource management system for bioinformatics data analysis
  ☆69Updated 5 years ago
• marbl / MetaCarvel
  MetaCarvel: A scaffolder for metagenomes
  ☆14Updated last year
• marbl / harvest-tools
  ☆10Updated 10 months ago
• philippmuench / plasmidminer
  in silico plasmid extraction
  ☆13Updated 8 years ago
• splatlab / mantis
  Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
  ☆83Updated last year
• nh13 / pbgzip
  Parallel Block GZIP
  ☆50Updated 9 years ago
• medvedevgroup / UST
  ☆24Updated 4 years ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated last year
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆19Updated 5 months ago