will-rowe / nthash
Go implementation of ntHash
☆20Updated 3 years ago
Alternatives and similar repositories for nthash:
Users that are interested in nthash are comparing it to the libraries listed below
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago
- ☆12Updated last year
- Write-once-read-many table for large datasets.☆27Updated last year
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Yet Another CWL Engine by Golang☆18Updated 6 years ago
- Burrows-Wheeler Transform and FM-index in golang☆20Updated last year
- Hail: extract lines from a file, a la `head -n x | tail -n y`☆9Updated 4 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Updated 11 months ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- succinct labeled graphs with collections and paths☆15Updated 6 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 3 years ago
- Format CSV file as human readable table☆38Updated 3 years ago
- example applications built using bíogo☆18Updated 3 years ago
- Simple and fast MinHash implementation in C with Python wrapper☆13Updated 4 years ago
- A Brand New LSH: The fly’s olfactory circuits algorithm☆11Updated 6 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 4 years ago
- Histosketching Using Little Kmers☆56Updated last year
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Updated 3 years ago
- PROJECT DEPRECATED! Instead see http://flowbase.org and http://scipipe.org for libraries built on this pattern☆15Updated 7 years ago
- A command line program for large scale buffering between piped programs☆14Updated 3 years ago
- workflow and resource management system for bioinformatics data analysis☆69Updated 4 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.☆21Updated 3 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated 2 months ago
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14Updated this week
- Compute cluster (HPC) job submission library for Go (#golang) based on the open DRMAA standard.☆48Updated 8 months ago
- LMS algorithm for computing edit distance with SIMD optimizations☆11Updated last year
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆15Updated last year
- Python bindings to minimap2☆16Updated 7 years ago