will-rowe / nthash

Related projects ⓘ

Alternatives and complementary repositories for nthash

• otiai10 / yacle
  Yet Another CWL Engine by Golang
  ☆18Updated 5 years ago
• Malfoy / Miekki
  Minhash Index Extended to Knead Kmer Intersection
  ☆11Updated 4 years ago
• dib-lab / MQF
  ☆12Updated last year
• biogo / examples
  example applications built using bíogo
  ☆18Updated 3 years ago
• shenwei356 / bwt
  Burrows-Wheeler Transform and FM-index in golang
  ☆20Updated last year
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 3 years ago
• kdm9 / hail
  Hail: extract lines from a file, a la `head -n x | tail -n y`
  ☆8Updated 4 years ago
• ready-steady / hdf5
  Reader and writer of HDF5 files
  ☆18Updated 7 years ago
• wormtable / wormtable
  Write-once-read-many table for large datasets.
  ☆28Updated last year
• dnbaker / bonsai
  Bonsai: Fast, flexible taxonomic analysis and classification
  ☆70Updated 7 months ago
• informationsea / tableview
  Format CSV file as human readable table
  ☆38Updated 3 years ago
• otiai10 / cwl.go
  CWL (and input file) parser for Golang, used by github.com/otiai10/yacle
  ☆22Updated 5 years ago
• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆55Updated last year
• zeebo / wyhash
  Go port of wyhash v3
  ☆13Updated 2 years ago
• dgruber / drmaa
  Compute cluster (HPC) job submission library for Go (#golang) based on the open DRMAA standard.
  ☆48Updated 4 months ago
• brentp / irelate
  Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang
  ☆47Updated 4 years ago
• jteutenberg / downpore
  Suite of tools for use in genome assembly and consensus. Work in progress.
  ☆31Updated 3 years ago
• brentp / xopen
  open files for buffered reading and writing in #golang
  ☆61Updated 2 years ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 3 years ago
• MG-RAST / AWE
  workflow and resource management system for bioinformatics data analysis
  ☆69Updated 4 years ago
• biogo / store
  bíogo data store repository
  ☆38Updated 4 years ago
• grailbio / bio
  Bioinformatic infrastructure libraries
  ☆77Updated 4 years ago
• vgteam / xg-old
  succinct labeled graphs with collections and paths
  ☆15Updated 6 years ago
• opencoff / go-bbhash
  Fast Scalable Minimal Perfect Hash for Large Keysets
  ☆32Updated 4 years ago
• turpinandrew / shuff
  Static Huffman coding
  ☆10Updated 7 years ago
• pantsing / flylsh
  A Brand New LSH: The fly’s olfactory circuits algorithm
  ☆11Updated 6 years ago
• samuell / glow
  PROJECT DEPRECATED! Instead see http://flowbase.org and http://scipipe.org for libraries built on this pattern
  ☆15Updated 7 years ago
• splatlab / debgr
  deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph
  ☆30Updated 3 years ago
• mattmight / calculendar
  A command line tool that uses a Boolean calculus of calendars for computing availability (currently supports Google Calendar API)
  ☆25Updated 3 years ago
• lgautier / mashing-pumpkins
  Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.
  ☆21Updated 2 months ago