will-rowe / nthashLinks
Go implementation of ntHash
☆20Updated 4 years ago
Alternatives and similar repositories for nthash
Users that are interested in nthash are comparing it to the libraries listed below
Sorting:
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- Burrows-Wheeler Transform and FM-index in golang☆20Updated 2 years ago
- A Brand New LSH: The fly’s olfactory circuits algorithm☆11Updated 7 years ago
- succinct labeled graphs with collections and paths☆15Updated 7 years ago
- example applications built using bíogo☆18Updated 4 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Updated last year
- Squeakr: An Exact and Approximate k -mer Counting System☆86Updated 10 months ago
- Parallel Block GZIP☆50Updated 9 years ago
- Bioinformatic infrastructure libraries☆78Updated 5 years ago
- An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.☆44Updated 3 years ago
- Reader and writer of HDF5 files☆18Updated 8 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- ♥ Essential Functions for DNA Manipulation☆20Updated 6 months ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- Practical Dynamic de Bruijn Graphs☆18Updated 5 years ago
- Implicit Interval Tree with Interpolation Index☆42Updated 3 years ago
- biogo high throughput sequencing repository☆132Updated 4 months ago
- Go / Golang Bioinformatics Library☆45Updated last year
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Updated 9 years ago
- MetaCarvel: A scaffolder for metagenomes☆14Updated last year
- Histosketching Using Little Kmers☆56Updated 2 years ago
- Write-once-read-many table for large datasets.☆27Updated 2 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Updated 7 years ago
- ☆28Updated 8 months ago
- Format CSV file as human readable table☆40Updated 4 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆88Updated last year
- De Bruijn graph representation in low memory☆35Updated last year
- ☆13Updated 9 years ago