maximilianh / pubMunch
various tools to download, convert and process the full text of scientific articles
☆62Updated 2 years ago
Alternatives and similar repositories for pubMunch:
Users that are interested in pubMunch are comparing it to the libraries listed below
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Updated 2 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated 2 months ago
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆43Updated this week
- A framework for keeping biomedical text mining result up-to-date☆42Updated 4 years ago
- Software for exploration of gene expression data from single-cell RNA sequencing.☆28Updated 5 years ago
- Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer☆41Updated 2 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated last year
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- Library for manipulating genomic variants and predicting their effects☆84Updated 9 months ago
- Efficient handling of FASTQ files from Python☆51Updated 7 months ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆29Updated 6 years ago
- Exposing public genomics data via computable and searchable metadata☆13Updated 9 months ago
- A metadata commons to store research software metadata☆41Updated last week
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 6 years ago
- Quick access to gene synonyms☆27Updated last week
- The command-line interface to GGD☆42Updated 2 years ago
- Repo for downloading and storing OMIM data☆19Updated 8 years ago
- ☆24Updated 4 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 6 years ago
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆30Updated last week
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆64Updated last month
- Biological Graphic tool in Python☆34Updated 4 years ago
- phenotype-based prioritization of candidate genes for human diseases☆65Updated 2 years ago
- Machine Learning to Detect Cancer Biomarkers from RNAseq Data☆33Updated 5 years ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- Biomedical wordlists (of drugs, genes, etc) for several text mining projects☆18Updated 2 years ago
- A web app that uses machine learning to recommend the most suitable journals based on the text content of your preprint☆20Updated last year
- conda recipes for genomic data☆85Updated 3 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 4 years ago
- paplot creates various dynamic and interactive reports for cancer genome analysis.☆25Updated 2 years ago