Alternatives and similar repositories for pubMunch:

Users that are interested in pubMunch are comparing it to the libraries listed below

• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 4 years ago
• AlexsLemonade / RNA-Seq-Exercises
  Exercises for training scientists to perform some RNA-seq analyses.
  ☆11Updated 5 years ago
• deweylab / MetaSRA-pipeline
  MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
  ☆43Updated last year
• parklab / nozzle
  Nozzle is a report generation toolkit for data analysis pipelines implemented in R.
  ☆68Updated 9 years ago
• macarthur-lab / omim
  Repo for downloading and storing OMIM data
  ☆18Updated 8 years ago
• jakelever / biowordlists
  Biomedical wordlists (of drugs, genes, etc) for several text mining projects
  ☆18Updated last year
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 2 years ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 2 years ago
• jakelever / cancermine
  Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
  ☆41Updated 2 years ago
• openvax / topiary
  Predict mutated T-cell epitopes from sequencing data
  ☆30Updated last month
• gmcvicker / genome
  Python library and scripts for retrieval and storage of genomics data in HDF5 format
  ☆26Updated 5 years ago
• KnowEnG / SequencEnG
  An interactive learning resource for next-generation sequencing (NGS) techniques
  ☆28Updated 6 years ago
• vatlab / varianttools
  software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
  ☆31Updated 3 years ago
• biothings / myvariant.py
  Python client for MyVariant.info web services.
  ☆23Updated 2 months ago
• mentatpsi / KEGG-Crawler
  A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.
  ☆20Updated last year
• YuLab-SMU / ReactomePA
  Reactome Pathway Analysis
  ☆40Updated 5 months ago
• dieterich-lab / circtools
  circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line dri…
  ☆27Updated last year
• NCBI-Hackathons / rnaseqview
  RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon
  ☆37Updated 7 years ago
• phenopolis / phenopolis
  An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data
  ☆33Updated 2 years ago
• oncojs / lolliplot
  Chart to aid in understanding mutations and their location on a gene.
  ☆22Updated 2 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆84Updated 8 months ago
• opentargets / genetics-finemapping
  Fine-mapping pipeline for Open Targets Genetics
  ☆26Updated 2 years ago
• greenelab / tad_pathways_pipeline
  Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs
  ☆11Updated 5 years ago
• BauerLab / ngsane
  Analysis Framework for Biological Data from High Throughput Experiments
  ☆34Updated 8 years ago
• genepattern / genepattern-server
  The GenePattern Server web application
  ☆36Updated 3 weeks ago
• greenelab / generic-expression-patterns
  Distinguishing between generic and experiment-specific gene expression signals.
  ☆12Updated 2 years ago
• iobio / minion
  Server wrapper that turns command line tools into web services
  ☆61Updated 6 years ago
• bwlewis / 1000_genomes_examples
  Examples using R and 1000 genomes data
  ☆28Updated 3 years ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆50Updated 5 years ago
• omicidx / omicidx-parsers
  Exposing public genomics data via computable and searchable metadata
  ☆12Updated 8 months ago