various tools to download, convert and process the full text of scientific articles
☆64Dec 26, 2022Updated 3 years ago
Alternatives and similar repositories for pubMunch
Users that are interested in pubMunch are comparing it to the libraries listed below
Sorting:
- various tools to download, convert and process the full text of scientific articles☆10Apr 2, 2024Updated last year
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆17Feb 19, 2026Updated 2 weeks ago
- Interactive package for Short AsyNchronous Time-series Analysis (SANTA) in R, implemented in Shiny☆11Mar 6, 2024Updated 2 years ago
- ☆10Jul 23, 2020Updated 5 years ago
- cross-species analysis of cell identities, markers and regulations☆12Jul 11, 2025Updated 7 months ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- ☆14May 26, 2020Updated 5 years ago
- ☆13Nov 13, 2018Updated 7 years ago
- Human Primary T cells: A Practical Guide☆15Sep 18, 2018Updated 7 years ago
- Convert TCR gene names☆15Dec 26, 2025Updated 2 months ago
- CRISPR NGS data analysis and visualization pipeline☆16Jul 26, 2019Updated 6 years ago
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆13Oct 29, 2022Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63May 18, 2020Updated 5 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing☆26Jul 20, 2025Updated 7 months ago
- Collection of useful methods for single cell analysis☆15Aug 22, 2024Updated last year
- R package to quickly obtain count vectors from indexed bam files☆15Jun 13, 2025Updated 8 months ago
- Permutation Tests for Linear Models☆16Nov 21, 2025Updated 3 months ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 9 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Feb 9, 2020Updated 6 years ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- Efficient querying of biological databases☆42Oct 27, 2025Updated 4 months ago
- 🐶 hlabud: HLA genotype analysis in R☆17Apr 11, 2025Updated 10 months ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Apr 29, 2025Updated 10 months ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 4 years ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆15Oct 10, 2019Updated 6 years ago
- Deep learning in genomics☆20Jan 26, 2019Updated 7 years ago
- Toolkit for manipulating FASTA and SAM files☆23Mar 14, 2024Updated last year
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- Code for detecting genomic island insertions in clades of microbes.☆19Sep 14, 2023Updated 2 years ago
- CellDepot: A unified repository for scRNA-seq data and visual exploration. J Mol Biol. 2021 Dec 28:167425. doi: 10.1016/j.jmb.2021.167425…☆24Apr 24, 2023Updated 2 years ago
- Gene Ontology subgraph visualizations☆20Jan 6, 2026Updated 2 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 5 months ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆24Feb 26, 2026Updated last week
- Genome-Genome circle synteny☆25Dec 1, 2023Updated 2 years ago
- A message queue for genomic surveillance☆20Oct 14, 2021Updated 4 years ago
- scPred package for cell type prediction from scRNA-seq data☆98Jan 18, 2024Updated 2 years ago
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 2 years ago
- Workflow solutions for mass-spectrometry based non-target analysis.☆70Updated this week