various tools to download, convert and process the full text of scientific articles
☆64Dec 26, 2022Updated 3 years ago
Alternatives and similar repositories for pubMunch
Users that are interested in pubMunch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- various tools to download, convert and process the full text of scientific articles☆10Apr 2, 2024Updated 2 years ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆19Mar 26, 2026Updated 3 months ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- Single cell RNA Seq data analysis with quantitative phenotypes☆13Nov 17, 2020Updated 5 years ago
- CRISPR NGS data analysis and visualization pipeline☆17Jul 26, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆13Oct 29, 2022Updated 3 years ago
- Extracting disease-specific genomic coordinates from GWAS catalog☆21Nov 29, 2019Updated 6 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- An automated post sequencing data processing pipeline for Illumina HiSeq☆14Aug 28, 2025Updated 10 months ago
- Dimensionality reduction for single cell RNA-seq data☆36Feb 9, 2020Updated 6 years ago
- C++ package for analysing CRISPR off targets☆21Apr 26, 2021Updated 5 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 9 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆15Aug 1, 2021Updated 4 years ago
- ☆14May 26, 2020Updated 6 years ago
- NGSphy: phylogenomic simulation of next-generation sequencing data☆14Mar 9, 2018Updated 8 years ago
- ☆13Nov 13, 2018Updated 7 years ago
- Contextual Vision Transformers for Robust Representation Learning☆14Oct 19, 2023Updated 2 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126May 4, 2026Updated 2 months ago
- Sparse matrix spy plot and sparkline renderer.☆19Nov 18, 2024Updated last year
- Genome-Genome circle synteny☆25Dec 1, 2023Updated 2 years ago
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆25Jun 25, 2026Updated 2 weeks ago
- Design primers for species-specific qPCR☆10Jun 1, 2017Updated 9 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆64May 18, 2020Updated 6 years ago
- A message queue for genomic surveillance☆20Oct 14, 2021Updated 4 years ago
- ☆11May 12, 2026Updated last month
- Scripts for using scanpy☆40Oct 20, 2025Updated 8 months ago
- Efficient querying of biological databases☆44Oct 27, 2025Updated 8 months ago
- Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data☆60Feb 8, 2026Updated 5 months ago
- kallisto index tag extractor☆19Jul 6, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Collection of useful methods for single cell analysis☆15Aug 22, 2024Updated last year
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- Resources for private and secure Machine Learning and Artificial Intelligence☆13Jun 13, 2022Updated 4 years ago
- ☆11Oct 8, 2021Updated 4 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Jul 30, 2020Updated 5 years ago
- Gene Ontology subgraph visualizations☆20Jan 6, 2026Updated 6 months ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago