Alternatives and similar repositories for pubMunch

Users that are interested in pubMunch are comparing it to the libraries listed below

• openvax / topiary
  Predict mutated T-cell epitopes from sequencing data
  ☆30Updated 3 months ago
• phenopolis / phenopolis
  An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data
  ☆33Updated 2 years ago
• AlexsLemonade / RNA-Seq-Exercises
  Exercises for training scientists to perform some RNA-seq analyses.
  ☆11Updated 5 years ago
• ncbi / magicblast
  ☆36Updated last month
• gmcvicker / genome
  Python library and scripts for retrieval and storage of genomics data in HDF5 format
  ☆26Updated 6 years ago
• macarthur-lab / omim
  Repo for downloading and storing OMIM data
  ☆19Updated 8 years ago
• jakelever / cancermine
  Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
  ☆41Updated 2 years ago
• KnowEnG / SequencEnG
  An interactive learning resource for next-generation sequencing (NGS) techniques
  ☆29Updated 6 years ago
• lucapinello / Haystack
  Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆30Updated 7 years ago
• biothings / myvariant.py
  Python client for MyVariant.info web services.
  ☆23Updated 4 months ago
• ding-lab / hotspot3d
  3D hotspot mutation proximity analysis tool
  ☆47Updated 2 years ago
• deweylab / MetaSRA-pipeline
  MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
  ☆43Updated last week
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 8 months ago
• pinellolab / haystack_bio
  Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆47Updated 2 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• statgenetics / seqspark
  SEQSpark documentation
  ☆18Updated 4 years ago
• opencb / biodata
  Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…
  ☆30Updated this week
• daler / metaseq
  Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
  ☆87Updated 4 years ago
• kauwelab / PolyRiskScore
  PRSKB is a website and command-line interface tool for calculating polygenic risk scores using GWA studies from the NHGRI-EBI Catalog.
  ☆29Updated 8 months ago
• WGLab / EHR-Phenolyzer
  A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
  ☆37Updated last year
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆50Updated 5 years ago
• hammerlab / cohorts
  Utilities for analyzing mutations and neoepitopes in patient cohorts
  ☆20Updated 6 years ago
• PhanstielLab / Sushi
  Tools for visualizing genomics data
  ☆68Updated 3 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆88Updated 5 years ago
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 4 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 2 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆84Updated 10 months ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago