mdozmorov / gwas2bed
Extracting disease-specific genomic coordinates from GWAS catalog
☆19Updated 5 years ago
Alternatives and similar repositories for gwas2bed:
Users that are interested in gwas2bed are comparing it to the libraries listed below
- GTEx analysis scripts☆20Updated 7 years ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 8 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- ☆37Updated 4 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 5 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- ☆33Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆30Updated 6 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 5 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- <<------ Use SnapATAC!!☆25Updated 5 years ago
- ☆25Updated 8 months ago
- ☆17Updated 6 years ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- R package with motifs for use with chromVAR☆25Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆19Updated 5 years ago
- ☆13Updated 7 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- DNA copy number detection from off-target sequence data☆30Updated 6 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated last week
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆70Updated 8 months ago