Alternatives and similar repositories for gwas2bed

Users that are interested in gwas2bed are comparing it to the libraries listed below

• ding-lab / PanCanAtlasGermline
  ☆44Updated 6 years ago
• WGLab / CancerVar
  Clinical interpretation of somatic mutations in cancer
  ☆47Updated 7 months ago
• parklab / SigMA
  Mutational signature analysis for low statistics SNV data
  ☆65Updated last year
• FunGeST / Palimpsest
  An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
  ☆71Updated last year
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆85Updated 3 months ago
• cfce / chilin
  ChIP-seq DC and QC Pipeline
  ☆36Updated 4 years ago
• Kyoko-wtnb / FUMA-webapp
  Source code of FUMA GWAS web application
  ☆58Updated last year
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆42Updated 4 years ago
• YeoLab / outrigger
  Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
  ☆67Updated 5 years ago
• cancer-genomics / delfi_scripts
  ☆74Updated 4 years ago
• broadinstitute / RNA_MUTECT_1.0-1
  ☆39Updated 5 years ago
• KarchinLab / 2020plus
  Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
  ☆49Updated last year
• caravagnalab / revolver
  Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data
  ☆65Updated 2 years ago
• BradnerLab / pipeline
  bradner lab computation pipeline scripts
  ☆54Updated 3 weeks ago
• mskcc / mutation-signatures
  Create mutation signatures from MAF's, and decompose them into Stratton signatures
  ☆60Updated 6 years ago
• nskvir / RepEnrich
  RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆28Updated 3 years ago
• ParkerLab / atactk
  A toolkit for working with ATAC-seq data.
  ☆24Updated last year
• adoebley / Griffin
  A flexible framework for nucleosome profiling of cell-free DNA
  ☆27Updated 2 years ago
• eyzhao / hrdetect-pipeline
  ☆36Updated 6 years ago
• natsuhiko / rasqual
  Robust Allele Specific Quantification and quality controL
  ☆40Updated 3 years ago
• broadinstitute / PhylogicNDT
  ☆77Updated 5 months ago
• riazn / bms038_analysis
  Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…
  ☆51Updated 7 years ago
• Danko-Lab / tutorials
  Tutorials covering various topics in genomic data analysis.
  ☆16Updated 6 years ago
• KCCG / rageseq
  RAGE-seq scripts
  ☆18Updated 4 years ago
• morrislab / TrackSig
  A framework to infer mutational signatures in cancer over time
  ☆55Updated 6 years ago
• cancer-genomics / reproduce_lucas_wflow
  ☆30Updated last year
• nadavbra / pwas
  Proteome-Wide Association Study
  ☆48Updated 4 years ago
• ylab-hi / ScanNeo
  A pipeline for identifying indel derived neoantigens using RNA-Seq data
  ☆30Updated 3 years ago
• gerstung-lab / MutationTimeR
  An R package to time somatic mutations
  ☆62Updated 4 years ago
• r3fang / snATAC
  <<------ Use SnapATAC!!
  ☆25Updated 6 years ago