LucasESBS / scoreCTLinks
scoreCT: Automated Cell Type Annotation
☆16Updated 3 years ago
Alternatives and similar repositories for scoreCT
Users that are interested in scoreCT are comparing it to the libraries listed below
Sorting:
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆64Updated last year
- ☆71Updated last year
- Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clu…☆23Updated 3 years ago
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 9 years ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆51Updated last year
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- A repository for sharing information on available COVID-19 RNA-Seq datasets☆81Updated 3 years ago
- software to detect doublets☆96Updated last year
- Scanpy use cases.☆90Updated 5 years ago
- Code and documentation for the curation of cellxgene datasets☆52Updated last week
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆124Updated this week
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- ☆70Updated 2 years ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆68Updated 2 years ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆77Updated last month
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆98Updated 6 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- Machine learning tutorial for biologists, designed for Oz Single Cells 2019☆15Updated 6 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 9 months ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆34Updated 10 months ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 3 months ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆96Updated 9 months ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- ATAC-seq lab for BIOINF545☆24Updated 11 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- ☆69Updated 7 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 5 months ago
- ☆49Updated this week
- Data and analysis for the Splatter paper☆29Updated 8 years ago