scoreCT: Automated Cell Type Annotation
☆16Apr 18, 2022Updated 4 years ago
Alternatives and similar repositories for scoreCT
Users that are interested in scoreCT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VEGA: VAE Enhanced by Gene Annotations☆18May 5, 2022Updated 4 years ago
- Single cell RNA Seq data analysis with quantitative phenotypes☆13Nov 17, 2020Updated 5 years ago
- Scripts for using scanpy☆40Oct 20, 2025Updated last year
- Compressor of multiple sequence alignments data☆10May 19, 2022Updated 4 years ago
- tRNA Analysis of eXpression☆15Feb 13, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆26Jul 12, 2023Updated 3 years ago
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Nov 1, 2018Updated 8 years ago
- This repo is for the metadata schemas associated with the HCA☆71Aug 8, 2026Updated 2 months ago
- Category-wide association study (CWAS) (Werling et al., 2018; An et al., 2018)☆11Apr 5, 2026Updated 6 months ago
- Sample code and other artifacts for data science and analytics at the UCSF Library☆11Jul 19, 2019Updated 7 years ago
- Tools for working with UCSC super pathway☆10May 19, 2015Updated 11 years ago
- 'minis' is a software for electrophysiological data analysis. It allows you to detect and analyse spontaneous postsynaptic potetnials/cur…☆12Sep 21, 2026Updated last month
- Super fast Git tree filtering.☆18Apr 1, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- CRISPR knock-in design at scale☆13Oct 15, 2026Updated 2 weeks ago
- RNA seq analysis using Bioconductor (analysis built on limma, edgeR)☆12Sep 23, 2022Updated 4 years ago
- All UCSC Genome Browser source code that is under an open source license, mostly file format converters, command line tools and C librari…☆14Dec 15, 2025Updated 10 months ago
- ☆12Apr 21, 2023Updated 3 years ago
- scRNA seq analysis using Seurat V3☆13Jun 23, 2021Updated 5 years ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- Keras network for spike detection from calcium traces☆12Jul 7, 2020Updated 6 years ago
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆11Apr 28, 2023Updated 3 years ago
- Automatically use the latest “vX.X.X” tag as version in your Python package☆13Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆44Oct 20, 2023Updated 3 years ago
- Query the gene models of a given organism/assembly☆27Aug 27, 2026Updated 2 months ago
- List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.☆14Sep 3, 2016Updated 10 years ago
- Variant Calling for the HPRC2☆20May 26, 2026Updated 5 months ago
- Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org☆14Oct 20, 2026Updated last week
- Library for the Handle Graph abstraction☆25Oct 19, 2026Updated 2 weeks ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆14Nov 4, 2022Updated 3 years ago
- ☆24Apr 15, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Jun 14, 2021Updated 5 years ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 7 months ago
- k nearest neighbor (KNN) graphs via Pearson correlation distance and local sensitive hashing (LSH).☆17Nov 14, 2019Updated 6 years ago
- Links to data science, bioinformatics, statistics, and machine learning resources☆18Aug 20, 2020Updated 6 years ago
- various tools to download, convert and process the full text of scientific articles☆64Dec 26, 2022Updated 3 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆17Dec 10, 2024Updated last year
- An interactive image processing program for biologists written in Python.☆26Mar 4, 2026Updated 7 months ago