Rostlab / relnaLinks
Biomedical Relation Extraction for Transcription Factor and Gene / Gene Products (part of a Master Thesis at Rostlab, TUM)
☆12Updated 7 years ago
Alternatives and similar repositories for relna
Users that are interested in relna are comparing it to the libraries listed below
Sorting:
- Reach Biomedical Information Extraction☆98Updated 11 months ago
- a Python 3 command-line tool to maintain a DB mirror of MEDLINE (https://pypi.python.org/pypi/medic) - ALERT: As I have moved out of scie…☆25Updated 10 years ago
- Train word2vec on Pubmed data, compare 2 GO terms, compare 2 genes.☆12Updated 8 years ago
- NLP framework in python for entity recognition and relationship extraction☆115Updated 2 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- SNP Extraction Tool for Human Variations☆27Updated last year
- Bidirectional Recurrent Neural Network based sequence labeling for Medical Text.☆25Updated 9 years ago
- a Python repository for content-based recommendation based on Latent semantic analysis (LSA) topic distance and Rocchio Algorithm, see t…☆48Updated 8 years ago
- Tips and tricks for plotting in python☆28Updated 6 years ago
- Vector space representation of genetic data☆36Updated 8 years ago
- Build tables of information by extracting facts from indexed text corpora via a simple and effective query language.☆56Updated 6 years ago
- ☆21Updated 8 years ago
- NLP pipeline using word2vec (preprocessing/embedding/prediction/clustering)☆116Updated last year
- Hive Plots in using Python & matplotlib!☆71Updated 7 years ago
- NLM .nxml to text format conversion☆24Updated 10 years ago
- Bayesian Factorization with Side Information in C++ with Python wrapper☆41Updated 3 years ago
- Robust Ensemble of SVMs☆21Updated 11 years ago
- A flexible version of CorEx developed for bio-data challenges that handles missing data, continuous/discrete variables, multi-CPU, overla…☆142Updated 4 years ago
- markov cluster algorithm - python☆82Updated 8 years ago
- Tools for munging genomic data☆21Updated 6 years ago
- Topic modelling software using non-parametric methods☆70Updated 9 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- High-performance Non-negative Matrix Factorizations (NMF) - Python/C++☆49Updated 7 years ago
- word vector library☆34Updated 6 years ago
- NLP pipeline software using common workflow language☆35Updated 6 years ago
- A framework for keeping biomedical text mining result up-to-date☆42Updated 5 years ago
- PyRDM is a Python-based library for research data management (RDM). It facilitates the automated publication of scientific software and a…☆32Updated 4 years ago
- Machine-curated database of genetic disease and genome-wide association studies☆57Updated 6 years ago
- ☆13Updated 10 years ago
- A tool for generating heatmaps from hierarchically clustered data.☆40Updated 7 years ago