Rostlab / relna
Biomedical Relation Extraction for Transcription Factor and Gene / Gene Products (part of a Master Thesis at Rostlab, TUM)
☆12Updated 6 years ago
Related projects: ⓘ
- Vector space representation of genetic data☆36Updated 7 years ago
- NLM .nxml to text format conversion☆24Updated 9 years ago
- ☆16Updated 6 years ago
- SNP Extraction Tool for Human Variations☆27Updated 7 months ago
- ☆12Updated this week
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆25Updated 8 years ago
- PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as i…☆24Updated 5 years ago
- ☆21Updated 7 years ago
- ☆12Updated 9 years ago
- DeepDive Biomedical Tools☆14Updated 7 years ago
- NLP pipeline software using common workflow language☆34Updated 5 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆19Updated 4 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- a Python 3 command-line tool to maintain a DB mirror of MEDLINE (https://pypi.python.org/pypi/medic) - ALERT: As I have moved out of scie…☆25Updated 8 years ago
- word vector library☆34Updated 4 years ago
- Glove applied to Pubmed Central BioC Corpus☆9Updated 9 years ago
- Retrieve and process PubTator annotations☆43Updated last year
- Reach Biomedical Information Extraction☆97Updated 2 weeks ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Updated 2 months ago
- Train word2vec on Pubmed data, compare 2 GO terms, compare 2 genes.☆12Updated 7 years ago
- Computing term cooccurrence in MEDLINE☆16Updated 3 years ago
- Tips and tricks for plotting in python☆28Updated 5 years ago
- ☆30Updated this week
- The Clustergrammer interactive Jupyter notebook widget☆47Updated last year
- Tool that converts between BioC XML files and BioC JSON files☆16Updated 7 years ago
- A framework for keeping biomedical text mining result up-to-date☆41Updated 4 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆59Updated 3 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Updated 8 years ago
- A machine learning software for extracting information from scholarly documents☆23Updated 3 years ago