fabriziocosta / GraphEmbed
Compute a 2D embedding of a data matrix given supervised class information.
☆12Updated 5 years ago
Alternatives and similar repositories for GraphEmbed:
Users that are interested in GraphEmbed are comparing it to the libraries listed below
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- SemI-SUpervised generative Autoencoder models for single cell data☆18Updated 3 years ago
- ☆12Updated last year
- Marker Selection by matching manifolds and elastic net☆23Updated 4 months ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 5 months ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆17Updated 3 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 3 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆14Updated 3 years ago
- ☆18Updated 3 years ago
- Assembles a graph manifold from time series single-cell RNAseq data☆17Updated 3 years ago
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- ☆19Updated 3 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆12Updated 4 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆42Updated 7 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆29Updated 2 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated 9 months ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆11Updated 2 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Fast motif matching in R☆46Updated last year
- ☆11Updated 4 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆30Updated 2 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- Data and analysis for the Splatter paper☆28Updated 7 years ago