apietrelli / myVCF
myVCF: a web-based platform for target and exome mutations data management
☆20Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for myVCF
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasets☆21Updated 6 years ago
- Automated human exome/genome variants detection from FASTQ files☆22Updated 3 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆20Updated 4 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆31Updated 8 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Updated 4 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Updated 6 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 5 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆20Updated 7 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 4 months ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 10 months ago
- MSKCC Reis-Filho Lab pipeline thingy☆16Updated 3 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- A set of tools to annotate VCF files with expression and readcount data☆25Updated 2 months ago