mahmoodlab / Patho-BenchLinks
Standardized benchmark for computational pathology foundation models.
☆75Updated last week
Alternatives and similar repositories for Patho-Bench
Users that are interested in Patho-Bench are comparing it to the libraries listed below
Sorting:
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆133Updated 3 months ago
- Multimodal prototyping for cancer survival prediction - ICML 2024☆83Updated 3 months ago
- Toolkit for large-scale whole-slide image processing.☆231Updated last week
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆102Updated 7 months ago
- List of pathology feature extractors and foundation models☆128Updated 4 months ago
- Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024☆138Updated 6 months ago
- MADELEINE: multi-stain slide representation learning (ECCV'24)☆56Updated 3 months ago
- Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023☆104Updated last year
- ☆27Updated 4 months ago
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆148Updated last year
- Histopathology Image Analysis☆92Updated last year
- [MICCAI 2023 Oral] The official code of "Pathology-and-genomics Multimodal Transformer for Survival Outcome Prediction" (top 9%)☆97Updated 2 months ago
- ☆52Updated 2 years ago
- Solid Tumor Associative Modeling in Pathology☆77Updated this week
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆99Updated 4 months ago
- This repo provides the pipeline of processing TCGA whole-slide images for downstream pathology analysis.☆68Updated 2 months ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆78Updated last year
- This package provides tools for training supervised machine learning models for computational pathology tasks using tile-level embeddings…☆38Updated 3 weeks ago
- DAS-MIL: Distilling Across Scales for MILClassification of Histological WSIs☆58Updated 6 months ago
- Histopathology Slides Preprocessing Pipeline☆38Updated 2 months ago
- TCGA Pathology Reports in Machine Readable Text☆46Updated last year
- A transformer-based weakly supervised computational pathology method for clinical-grade diagnosis and molecular state revelation of gliom…☆34Updated 5 months ago
- First commit☆62Updated 2 years ago
- RandStainNA: Simple and efficient augmentations for histology [MICCAI 2022]☆54Updated 2 years ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆28Updated last year
- GrandQC tool for tissue detection and quality control in pathology☆47Updated 2 months ago
- ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) cla…☆66Updated 2 years ago
- The official implementation of GPFM☆60Updated 3 weeks ago
- Tools to build deep learning pipelines.☆101Updated 6 months ago
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆155Updated last year