mahmoodlab / Patho-BenchLinks
Standardized benchmark for computational pathology foundation models.
☆87Updated 3 weeks ago
Alternatives and similar repositories for Patho-Bench
Users that are interested in Patho-Bench are comparing it to the libraries listed below
Sorting:
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆136Updated 4 months ago
- Multimodal prototyping for cancer survival prediction - ICML 2024☆86Updated 4 months ago
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆105Updated 8 months ago
- Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024☆144Updated 7 months ago
- [MICCAI 2023 Oral] The official code of "Pathology-and-genomics Multimodal Transformer for Survival Outcome Prediction" (top 9%)☆97Updated 4 months ago
- Toolkit for large-scale whole-slide image processing.☆287Updated last week
- Solid Tumor Associative Modeling in Pathology☆81Updated this week
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆152Updated last year
- Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023☆104Updated 2 years ago
- List of pathology feature extractors and foundation models☆138Updated last month
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆102Updated 5 months ago
- TCGA Pathology Reports in Machine Readable Text☆48Updated last year
- MADELEINE: multi-stain slide representation learning (ECCV'24)☆57Updated 4 months ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆79Updated last year
- ☆54Updated 2 years ago
- Multimodal Whole Slide Foundation Model for Pathology☆228Updated 3 months ago
- This package provides tools for training supervised machine learning models for computational pathology tasks using tile-level embeddings…☆38Updated 2 months ago
- ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) cla…☆66Updated 2 years ago
- DAS-MIL: Distilling Across Scales for MILClassification of Histological WSIs☆60Updated 7 months ago
- RandStainNA: Simple and efficient augmentations for histology [MICCAI 2022]☆54Updated 2 years ago
- Awesome List of Digital and Computational Pathology Resources☆65Updated 5 months ago
- ☆27Updated 5 months ago
- Histopathology Slides Preprocessing Pipeline☆40Updated 3 months ago
- First commit☆62Updated 3 years ago
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆155Updated last year
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆104Updated 7 months ago
- A vision language model for gigapixel whole slide images in histopathology☆69Updated last week
- This repo provides the pipeline of processing TCGA whole-slide images for downstream pathology analysis.☆71Updated 3 months ago
- Standardized initialization and loading of pretrained MIL models☆30Updated last month
- Tools to build deep learning pipelines.☆104Updated 8 months ago