Alternatives and similar repositories for HistomicsStream

Users that are interested in HistomicsStream are comparing it to the libraries listed below

• DSLituiev / slideslicer
  a toolbox for manipulation of digital pathology slides and annotations
  ☆19Updated 5 years ago
• SarderLab / tf-WSI-dataset-utils
  An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow
  ☆15Updated 4 years ago
• DigitalSlideArchive / HistomicsUI
  A Girder plugin for pathology image annotations and analysis.
  ☆74Updated last week
• DigitalSlideArchive / digital_slide_archive
  The official deployment of the Digital Slide Archive and HistomicsTK.
  ☆127Updated last week
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆83Updated this week
• SarderLab / Histo-cloud
  ☆21Updated 6 months ago
• bgilbert / anonymize-slide
  Delete the label from a whole-slide image
  ☆65Updated 4 years ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆56Updated last year
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆36Updated last year
• Bayer-Group / tiffslide
  TiffSlide - cloud native openslide-python replacement based on tifffile
  ☆103Updated 3 months ago
• choosehappy / CohortFinder
  Intelligent data partitioning using quality control metrics
  ☆19Updated 3 months ago
• Booritas / slideio
  ☆73Updated 2 weeks ago
• qupath / qupath-extension-template
  Template to help create a new QuPath extension
  ☆21Updated last month
• glencoesoftware / isyntax2raw
  iSyntax to raw format converter
  ☆22Updated 3 weeks ago
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆39Updated 2 weeks ago
• CBICA / HistoReg
  Framework for registration of sequential digitized histology slices
  ☆28Updated 3 years ago
• imi-bigpicture / wsidicom
  Python package for reading DICOM WSI file sets.
  ☆44Updated 2 weeks ago
• clij / clupath
  GPU-accelerated image processing in QuPath
  ☆15Updated 3 years ago
• labsyspharm / ome-tiff-pyramid-tools
  Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.
  ☆17Updated last month
• javadnoorb / HistCNN
  A set of codes to classify H&E slides using deep learning
  ☆30Updated 3 years ago
• ImagingDataCommons / IDC-Tutorials
  Self-guided notebook tutorials to help get started with IDC
  ☆36Updated 2 weeks ago
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆36Updated last month
• imi-bigpicture / wsidicomizer
  Python library for converting WSI files to DICOM
  ☆76Updated 3 weeks ago
• manzt / napari-lazy-openslide
  Lazily load multiscale whole-slide images with openslide and dask
  ☆33Updated 2 years ago
• maragraziani / interpretAI_DigiPath
  Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021
  ☆22Updated 4 years ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆80Updated last year
• Borda / BIRL
  BIRL: Benchmark on Image Registration methods with Landmark validations
  ☆93Updated 3 years ago
• mstritt / orbit-image-analysis
  A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.
  ☆59Updated 4 years ago
• DigitalSlideArchive / DSA-WSI-DeID
  A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.
  ☆17Updated last month
• Project-MONAI / MetricsReloaded
  ☆90Updated 3 months ago