Alternatives and similar repositories for HistomicsStream:

Users that are interested in HistomicsStream are comparing it to the libraries listed below

• DigitalSlideArchive / HistomicsUI
  A Girder plugin for pathology image annotations and analysis.
  ☆63Updated this week
• DigitalSlideArchive / DSA-WSI-DeID
  A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.
  ☆15Updated this week
• DigitalSlideArchive / digital_slide_archive
  The official deployment of the Digital Slide Archive and HistomicsTK.
  ☆112Updated this week
• DSLituiev / slideslicer
  a toolbox for manipulation of digital pathology slides and annotations
  ☆19Updated 4 years ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated 8 months ago
• Bayer-Group / tiffslide
  TiffSlide - cloud native openslide-python replacement based on tifffile
  ☆93Updated last month
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆35Updated this week
• glencoesoftware / isyntax2raw
  iSyntax to raw format converter
  ☆21Updated last year
• SarderLab / tf-WSI-dataset-utils
  An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow
  ☆15Updated 3 years ago
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆30Updated last year
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆75Updated this week
• Pathomation / pma_python
  Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy
  ☆30Updated 2 months ago
• SarderLab / Histo-cloud
  ☆20Updated this week
• bgilbert / anonymize-slide
  Delete the label from a whole-slide image
  ☆63Updated 3 years ago
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆34Updated last week
• HistoCleanQUB / HistoClean
  HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings…
  ☆28Updated 2 years ago
• imi-bigpicture / wsidicomizer
  Python library for converting WSI files to DICOM
  ☆68Updated 2 weeks ago
• choosehappy / CohortFinder
  Intelligent data partitioning using quality control metrics
  ☆17Updated 2 months ago
• imi-bigpicture / wsidicom
  Python package for reading DICOM WSI file sets.
  ☆40Updated 2 weeks ago
• ajinkya-kulkarni / PySpatialHistologyAnalysis
  Package using StarDist and Python that performs object detection and spatial analysis on H&E images
  ☆3Updated 3 months ago
• maragraziani / interpretAI_DigiPath
  Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021
  ☆21Updated 3 years ago
• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆31Updated 4 years ago
• manzt / napari-lazy-openslide
  Lazily load multiscale whole-slide images with openslide and dask
  ☆33Updated 2 years ago
• GoogleCloudPlatform / qupath-chcapi-extension
  Extension to QuPath application adding support for reading from Google Cloud Healthcare API.
  ☆22Updated 3 years ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆34Updated last year
• amspath / slidescape
  ☆24Updated 2 months ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆81Updated 7 months ago
• daangeijs / simple_wsi_viewer
  A simple web application for for viewing and navigating pathology whole-slide-images in your browser.
  ☆13Updated last year
• mstritt / orbit-image-analysis
  A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.
  ☆60Updated 3 years ago
• choosehappy / PatchSorter
  A tool for rapidly labeling objects using deep learning feature embedding
  ☆29Updated 5 months ago