mahmoodlab / KRONOSView external linksLinks
Foundation Model for Multiplex Spatial Proteomic Images
☆175Aug 21, 2025Updated 5 months ago
Alternatives and similar repositories for KRONOS
Users that are interested in KRONOS are comparing it to the libraries listed below
Sorting:
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆23May 16, 2025Updated 8 months ago
- MADELEINE: multi-stain slide representation learning (ECCV'24)☆66Feb 18, 2025Updated 11 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆64Mar 14, 2024Updated last year
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆39May 7, 2024Updated last year
- A fully scalable robust image feature extraction library.☆28Updated this week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 25, 2025Updated 7 months ago
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data☆12Dec 3, 2022Updated 3 years ago
- ☆17Mar 30, 2025Updated 10 months ago
- 🐝 | From Data to Prognosis: Embedding Multimodal Oncology Data for Precision Medicine☆31Dec 2, 2025Updated 2 months ago
- A relabeling tool for tiled segmentation with Dask☆17Sep 24, 2024Updated last year
- ☆15Jan 6, 2024Updated 2 years ago
- ☆31Jan 29, 2025Updated last year
- Scripts for data processing☆50Jun 6, 2024Updated last year
- ☆71Jan 18, 2023Updated 3 years ago
- Piecewise alignment for layers of mosaics☆35Sep 2, 2025Updated 5 months ago
- ☆29Apr 26, 2024Updated last year
- Optimize image processing workflows in napari☆17May 1, 2025Updated 9 months ago
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆362Updated this week
- Virtual Alignment of pathoLogy Image Series☆208Jun 25, 2025Updated 7 months ago
- The complete FlowSOM package known from R, now available in Python!☆27Feb 2, 2026Updated last week
- ☆33Oct 10, 2025Updated 4 months ago
- Bash scripts to simplify your life (let's hope so!)☆11Jul 21, 2025Updated 6 months ago
- Multimodal prototyping for cancer survival prediction - ICML 2024☆113Feb 22, 2025Updated 11 months ago
- First commit☆65Jul 5, 2022Updated 3 years ago
- ☆20Dec 20, 2022Updated 3 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆265Dec 23, 2023Updated 2 years ago
- [ECCV 2024 Oral] Knowledge-enhanced pretraining for computational pathology☆46Oct 1, 2025Updated 4 months ago
- Repository in Support of EAGLE Submission☆20Oct 11, 2025Updated 4 months ago
- ☆13Jan 22, 2026Updated 3 weeks ago
- ☆11Sep 7, 2023Updated 2 years ago
- Automated Cell Toolkit☆24Oct 15, 2025Updated 3 months ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆30Feb 5, 2026Updated last week
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.☆10Apr 19, 2024Updated last year
- ☆15Dec 3, 2025Updated 2 months ago
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 6 months ago
- Know Your Orientation: A Viewpoint-Aware Framework for Polyp Segmentation☆11Dec 30, 2024Updated last year
- ☆18Feb 5, 2025Updated last year
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated 6 months ago