chengl7-lab / kmapLinks
A tool for visualising kmers in 2D space.
☆12Updated 11 months ago
Alternatives and similar repositories for kmap
Users that are interested in kmap are comparing it to the libraries listed below
Sorting:
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- deep learning-inspired explainable sequence model for transcription initiation☆100Updated 11 months ago
- code to run sei and obtain sei and sequence class predictions☆111Updated 3 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆87Updated 4 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆72Updated 2 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- ☆34Updated last year
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Updated last year
- off-targeting assessment of Cas9 gRNAs☆15Updated 4 years ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- ☆88Updated 2 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Updated 3 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 10 months ago
- ☆18Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated 2 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 6 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated last year
- This repository hosts a minimal version of a Python API for BPNet.☆55Updated 2 weeks ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆95Updated 11 months ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆33Updated last year
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆29Updated 6 months ago
- HiCorr: a Hi-C data bias-correction pipeline☆30Updated 10 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆41Updated 2 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆20Updated 6 months ago
- Extract 3D contacts (.pairs) from sequencing alignments☆124Updated last week
- Cooler demo using a Jupyter notebook Binder☆18Updated 5 years ago
- Normalization of RNA-seq gene expression☆105Updated 7 months ago
- pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs☆35Updated this week
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆94Updated 2 months ago