xCell 2.0: Robust Cell Type Enrichment Analysis
☆13Dec 11, 2025Updated 2 months ago
Alternatives and similar repositories for xCell2
Users that are interested in xCell2 are comparing it to the libraries listed below
Sorting:
- InstaPrism is an R package for fast implementation of BayesPrism☆47Jun 3, 2024Updated last year
- Training material for the GWAS Catalog REST API workshop☆13May 22, 2023Updated 2 years ago
- 🌓 Allele specific analyses across cell states and conditions☆10Nov 28, 2022Updated 3 years ago
- S-LDSC scripts for use on MR server.☆10Sep 23, 2021Updated 4 years ago
- several R scripts about Machine Learning that I code☆11Jun 3, 2021Updated 4 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆19Oct 26, 2025Updated 4 months ago
- Cheminformatic analysis of small molecule type drugs in DrugBank for their ability to form nanoparticles with indocyanine dyes.☆11Apr 30, 2018Updated 7 years ago
- Variant to disease dataset workflows for Open Targets Genetics☆13Aug 23, 2022Updated 3 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 2 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 3 years ago
- Generating polygenic risk scores in UK Biobank (University of Bristol)☆16Aug 14, 2020Updated 5 years ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 4 years ago
- A tool for visualising kmers in 2D space.☆12Feb 23, 2025Updated last year
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- An R package for Mendelian Randomization in Mediation setting☆17Mar 17, 2025Updated 11 months ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 12 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆41Apr 15, 2021Updated 4 years ago
- ☆11Dec 7, 2022Updated 3 years ago
- dynamic-updateable-index☆11Nov 10, 2015Updated 10 years ago
- UniqTag: Content-derived unique and stable identifiers for gene annotation☆10May 4, 2015Updated 10 years ago
- Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics☆14Oct 27, 2023Updated 2 years ago
- R script for generating functionally informed genetic risk scores from TWAS☆11Jul 20, 2023Updated 2 years ago
- ☆10Jul 2, 2024Updated last year
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- Fast manhattenplots using ggplot2☆13Feb 19, 2024Updated 2 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆14Jul 2, 2025Updated 8 months ago
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆12Sep 3, 2024Updated last year
- eVITTA: an easy Visualization and Inference Toolbox for Transcriptome Analysis☆12Mar 23, 2024Updated last year
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes…☆13Jun 9, 2022Updated 3 years ago
- GENetic Effect-Size distribution Inference from Summary-level data☆15Sep 6, 2020Updated 5 years ago
- Scripts and notebooks for models that enable better causal inferences in psychological sciences☆11Dec 24, 2024Updated last year
- Code utilized in the paper "A phenome-wide association and Mendelian randomization study for Alzheimer's disease: a prospective cohort st…☆12Jun 10, 2022Updated 3 years ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- abawaca is a binning program for metagenomics☆13May 20, 2017Updated 8 years ago