Alternatives and similar repositories for GOT

Users that are interested in GOT are comparing it to the libraries listed below

• aertslab / scenicplus
  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…
  ☆240Updated 11 months ago
• scverse / SnapATAC2
  Single-cell epigenomics analysis tools
  ☆301Updated this week
• morris-lab / CellOracle
  This is the alpha version of the CellOracle package
  ☆405Updated last year
• STOmics / SAW
  ☆181Updated last year
• STOmics / Stereopy
  A toolkit of spatial transcriptomic analysis.
  ☆270Updated last month
• Starlitnightly / single_cell_tutorial
  单细胞分析的中文pipeline
  ☆265Updated last year
• ventolab / CellphoneDB
  CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
  ☆455Updated 7 months ago
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆213Updated 2 weeks ago
• aertslab / pySCENIC
  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…
  ☆567Updated 6 months ago
• Teichlab / celltypist
  A tool for semi-automatic cell type classification
  ☆443Updated this week
• Winnie09 / GPTCelltype
  ☆218Updated last year
• Lindsey-LCFoong / Analysing-10X-ScRNA-data-Wang-et-al-2020-Nat-Commun-
  I redo the ScRNA analysis in the paper of Wang et al 2020, Nat Comm. Here's my modified script for Helen He Zhu github (https://github.co…
  ☆12Updated 4 years ago
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆337Updated last week
• mdozmorov / scATAC-seq_notes
  scATAC-seq data analysis tools and papers
  ☆128Updated 6 months ago
• genecell / single-cell-papers-with-code
  Papers with code for single cell related papers
  ☆299Updated 2 years ago
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆232Updated last week
• sunduanchen / Scissor
  Scissor package
  ☆247Updated last year
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆161Updated 3 years ago
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆98Updated 5 months ago
• kundajelab / chrombpnet
  Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
  ☆201Updated 4 months ago
• icbi-lab / infercnvpy
  Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
  ☆179Updated 2 weeks ago
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆451Updated last year
• IanevskiAleksandr / sc-type
  ☆282Updated last year
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆216Updated last year
• scverse / scanpy-tutorials
  Scanpy Tutorials.
  ☆231Updated 2 weeks ago
• theislab / scib
  Benchmarking analysis of data integration tools
  ☆400Updated 3 months ago
• lvxuan12 / SCSES
  ☆24Updated last week
• YCH-bioinf / FGOT-master
  ☆11Updated 4 months ago
• gao-lab / GLUE
  Graph-linked unified embedding for single-cell multi-omics data integration
  ☆445Updated 2 months ago
• calico / scBasset
  Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.
  ☆100Updated 4 months ago