luptior / pysbatch
Submit slurm cluster job(Sbatch) inside python and avoid shell script. Submission cmd can be customized to add more options.
☆14Updated 4 years ago
Alternatives and similar repositories for pysbatch
Users that are interested in pysbatch are comparing it to the libraries listed below
Sorting:
- IPython magic for SLURM.☆69Updated 5 years ago
- submit jobs to slurm with quick-and-dirty python☆95Updated 2 years ago
- Tabular seff☆81Updated 3 months ago
- A shell utility to help you launch Jupyter notebooks on high-performance computing systems in a simple, secure way.☆36Updated last month
- Generate NSF Collaborators and Other Affiliations Information from your publications☆27Updated 4 years ago
- A simple Python wrapper for Slurm with flexibility in mind.☆140Updated 3 months ago
- An Ansible role for installing and configuring CernVM-FS (CVMFS)☆14Updated last month
- An external library for delivering Slurm Elastic Computing.☆11Updated 8 years ago
- definition files and wrapper scripts used by NIH HPC staff to install user-facing apps on the Biowulf cluster☆30Updated 4 years ago
- Containers@TACC Workshop☆9Updated 2 months ago
- Container tools for scientific computing! Docs at https://singularityhub.github.io/singularityhub-docs☆69Updated 2 years ago
- A simple utility for executing multiple sequential or multi-threaded applications in a single multi-node batch job☆61Updated last year
- Apptainer in Docker!☆49Updated 5 months ago
- RNAcode - Detecting protein coding genes in multiple sequence alignment☆25Updated 8 months ago
- Methods to determine sequence element (unitig) presence/absence☆20Updated 5 months ago
- A unified array job submitter for LSF, SGE/UGE and Slurm☆32Updated 6 months ago
- Benchmarking bonito basecaller using E. coli assemblies☆11Updated 4 years ago
- Graph Clustering Merger☆35Updated last year
- Snakemake workflow management system and CLI generation tool☆57Updated 2 weeks ago
- super-slick Slurm and Condor cluster execution for Python☆25Updated last year
- Open source code for AlphaFold.☆20Updated last year
- a minimal, scriptable genome browser for python☆51Updated 4 months ago
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆49Updated last year
- ☆13Updated 2 months ago
- How to use Singularity!☆17Updated 4 years ago
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Updated 8 years ago
- python wrapper to submit jobs to bsub (and later qsub)☆44Updated 3 years ago
- source code for HpcGridRunner☆17Updated 3 years ago
- Gene prediction in metagenomic sequences using Glimmer augmented by phylogenetic classification and clustering☆16Updated 9 years ago
- Hierarchical genome assembly: de novo bacterial genome assembly using high coverage short sequencing reads☆11Updated 8 years ago