In-silico PCR amplification on complete genomes
☆11Sep 10, 2026Updated last month
Alternatives and similar repositories for silica
Users that are interested in silica are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- In-silico PCR, primer design and padlock design for in-situ sequencing☆55Aug 19, 2026Updated last month
- Report generator for Chanjo output☆10Jun 5, 2024Updated 2 years ago
- Web-based database system for flow cell management (incl. REST API)☆16Mar 7, 2024Updated 2 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆54Oct 28, 2025Updated 11 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- R package to streamline functional biogeography workflows and provide publication-ready plots☆12Sep 18, 2026Updated last month
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆84Dec 5, 2022Updated 3 years ago
- Multiplex Primer Design☆13May 3, 2020Updated 6 years ago
- Powerful long read aligner for Ruby☆14Aug 19, 2026Updated last month
- GUI for batch primer design with graphical output for PCR and SNP detection☆17Jun 28, 2026Updated 3 months ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Internationalisation of the HPO content☆20Feb 27, 2023Updated 3 years ago
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 8 years ago
- A easy-to-use Python API for Primer3 primer design.☆17Nov 10, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆16Sep 2, 2026Updated last month
- t-distributed stochastic neighbor embedding for microbiota data☆13May 12, 2019Updated 7 years ago
- Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach☆12Mar 21, 2024Updated 2 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆66Nov 7, 2023Updated 2 years ago
- RNAseq pipeline for alternative splicing junctions☆15Mar 26, 2026Updated 6 months ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆53Apr 2, 2025Updated last year
- Repo for downloading and storing OMIM data☆20Oct 6, 2016Updated 10 years ago
- Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes☆10Aug 2, 2016Updated 10 years ago
- A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants☆48May 21, 2017Updated 9 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆14Jul 12, 2024Updated 2 years ago
- Design gene specific KASP and CAPS/dCAPS primers for any species☆19Sep 19, 2022Updated 4 years ago
- VariantToolChest (VTC) is intended to be a powerful tool chest to analyze VCF files. I encourage anyone to contribute their tools and hel…☆25Apr 8, 2016Updated 10 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32May 31, 2016Updated 10 years ago
- Connect Siemens S7 to Mqtt with Homeassistant discovery support☆24Jun 27, 2026Updated 3 months ago
- ☆22Sep 22, 2022Updated 4 years ago
- ☆16Jan 5, 2018Updated 8 years ago
- React frontend to varapp☆10Sep 7, 2016Updated 10 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Clin.iobio - Workflow and reporting for iobio variant analysis pipeline☆12Oct 7, 2025Updated last year
- eXtasy: Variant Prioritization by Genomic Data Fusion☆13Feb 19, 2014Updated 12 years ago
- a programme for visualization of short sequence alignment and path navigation in graphical pan-genome☆26Jan 23, 2024Updated 2 years ago
- learn how to build a personal website using Quarto☆17Aug 14, 2026Updated 2 months ago
- A clone of the official AMOS git repo on sourceforge: https://sourceforge.net/projects/amos/☆19Nov 15, 2012Updated 13 years ago
- This repository contains a reciprocal BLAST program for filtering down BLAST results to best bidirectional hits. It also contains a toolk…☆17Jan 16, 2025Updated last year
- Shimmer is a software package for the characterization of genetic differences between two very similar samples, e.g., a tumor sample and …☆12Jan 12, 2023Updated 3 years ago