maxwshen / be_predict_bystanderLinks
Deep conditional autoregressive models for genome editing sequence-to-sequence problems
☆10Updated 4 years ago
Alternatives and similar repositories for be_predict_bystander
Users that are interested in be_predict_bystander are comparing it to the libraries listed below
Sorting:
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- nucleic acid folding☆110Updated 5 months ago
- A route planner for DNA assembly☆36Updated 8 months ago
- Associate pathways + gene ontologies with significant genes.☆10Updated 2 years ago
- A fast multiple sequence alignment program.☆151Updated 7 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆220Updated 3 weeks ago
- Repository of tutorials for The COBRA Toolbox☆24Updated this week
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆61Updated 2 months ago
- Computation of Microbial Ecosystems in Time and Space☆26Updated last month
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 10 months ago
- Motif Transformers for Predicting Protein-Protein Interactions Between a Novel Virus and Humans☆10Updated last year
- BGC Detection and Classification Using Deep Learning☆157Updated 2 years ago
- Protein 3D structure prediction pipeline☆97Updated this week
- ReFramed: metabolic modeling package☆63Updated 4 months ago
- An RNA manipulation library.☆56Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 7 years ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- ☆72Updated 2 months ago
- Template-based RNA secondary structure visualization☆27Updated last year
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- A multiple alignment analyser☆20Updated 4 years ago
- High-quality circular representations of taxonomic and phylogenetic trees☆106Updated last year
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- Python interface to running command-line and web-based MHC binding predictors☆99Updated last year
- 🎺 Plot DNA digestion band patterns with Python☆20Updated 8 months ago
- Create force-directed graphs of RNA secondary structures.☆110Updated 5 years ago
- The BiGG Models website server☆88Updated 6 years ago
- Find common blocks and differences between DNA sequences☆42Updated 3 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆123Updated last month
- Alignment of RNAs☆25Updated last year