maze: match visualizer
☆10Oct 11, 2021Updated 5 years ago
Alternatives and similar repositories for maze
Users that are interested in maze are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- for visual evaluation of read support for structural variation☆56Jun 4, 2024Updated 2 years ago
- Read visualizer for structural variants☆85Aug 18, 2018Updated 8 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated 2 years ago
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- SV☆15May 3, 2018Updated 8 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 6 years ago
- ☆13Jun 21, 2017Updated 9 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated 2 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆13May 29, 2020Updated 6 years ago
- ☆22Feb 5, 2025Updated last year
- Static Huffman coding☆10Apr 3, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆20Dec 6, 2017Updated 8 years ago
- Computes various SV statistics☆13Oct 12, 2023Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 7 years ago
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 9 years ago
- Python3 module for running MUMmer and reading the output☆33Mar 24, 2025Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Nov 5, 2020Updated 5 years ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- ☆11Sep 28, 2017Updated 9 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Refinements of the WFA alignment algorithm with better complexity☆27Mar 31, 2022Updated 4 years ago
- An extensible python-based genomics visualization engine☆145Aug 11, 2023Updated 3 years ago
- PHOsphoproteomic dissecTiOn using Networks☆16Jan 25, 2021Updated 5 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Generate Novel Insights from Gene Correlation Data☆14Jun 27, 2022Updated 4 years ago
- CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.☆12Jan 15, 2021Updated 5 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 7 years ago
- a GFA toolkit☆13Oct 4, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Implementation of the u-index☆12Jul 19, 2025Updated last year
- lumpy: a general probabilistic framework for structural variant discovery☆346Feb 22, 2026Updated 8 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 8 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆31Jul 13, 2021Updated 5 years ago
- ☆12Mar 12, 2026Updated 7 months ago
- ☆13Jan 23, 2020Updated 6 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Jun 27, 2022Updated 4 years ago