dellytools / maze
maze: match visualizer
☆9Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for maze
- Detects human contamination in bam files☆16Updated 4 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Hemang Parikh☆11Updated 8 years ago
- Hidden Markov Model based Copy number caller☆20Updated 3 weeks ago
- ☆9Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- Split a BAM file by haplotype support☆16Updated 6 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 6 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Variant call adjudication☆16Updated 5 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆17Updated 3 months ago
- ☆22Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 2 months ago
- ☆13Updated last year
- Pan gGnome Viewer☆10Updated 9 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 8 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆27Updated 2 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Functions to compare a SV call sets against a truth set.☆26Updated 6 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆13Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- ☆12Updated this week
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 5 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- fastq quality assessment and filtering tool☆18Updated last year