junyangq / snpnetLinks
snpnet: Fast and scalable lasso/elastic-net solver for large SNP data
☆34Updated last year
Alternatives and similar repositories for snpnet
Users that are interested in snpnet are comparing it to the libraries listed below
Sorting:
- LASSO for GWAS with summary statistics☆76Updated 5 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- An R package for multivariate adaptive shrinkage.☆92Updated 10 months ago
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- Repository for resources we'd like to share with the community.☆24Updated 3 years ago
- Every Gene Ever Annotated in published GWAS☆48Updated 2 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆34Updated 7 months ago
- As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-…☆44Updated 5 years ago
- software package for integrative genetic association analysis☆35Updated 2 years ago
- TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 o…☆48Updated 5 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last month
- Variational Inference of Polygenic Risk Scores☆28Updated 5 months ago
- An R package for performing STAAR procedure in whole-genome sequencing studies☆95Updated 7 months ago
- Glimma R package☆50Updated last year
- List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS☆31Updated 5 months ago
- Functional genomics and genome-wide association studies☆67Updated 7 years ago
- causal TWAS (cTWAS)☆45Updated last month
- QTL Discovery using Annotations☆26Updated 2 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆46Updated 2 years ago
- ☆22Updated 8 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- gwasrapidd: an R package to query, download and wrangle GWAS Catalog data☆99Updated 3 months ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 9 months ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Updated 7 years ago
- ☆29Updated 2 months ago
- ☆95Updated last year
- Linear mixed model for genomic analyses.☆107Updated 4 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 11 months ago
- Devel repository for minfi☆61Updated last year
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆38Updated 6 months ago