junyangq / snpnetLinks
snpnet: Fast and scalable lasso/elastic-net solver for large SNP data
☆35Updated last year
Alternatives and similar repositories for snpnet
Users that are interested in snpnet are comparing it to the libraries listed below
Sorting:
- LASSO for GWAS with summary statistics☆77Updated 5 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- An R package for multivariate adaptive shrinkage.☆92Updated 11 months ago
- Glimma R package☆50Updated last year
- TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 o…☆48Updated 5 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 10 months ago
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 2 weeks ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Updated 7 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- Every Gene Ever Annotated in published GWAS☆49Updated 2 years ago
- An R package for performing STAAR procedure in whole-genome sequencing studies☆95Updated 8 months ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- ☆29Updated 3 months ago
- ☆22Updated 8 years ago
- Learn and validate subtypes from multiple traits☆20Updated 4 years ago
- Repository for resources we'd like to share with the community.☆24Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. E…☆24Updated last week
- Devel repository for minfi☆60Updated last year
- Generalized linear Mixed Model Association Tests☆44Updated last year
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 5 months ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- Bioconductor package for management of multi-assay data☆72Updated last month
- snpnet - Efficient Lasso Solver for Large-scale genetic variant data☆19Updated last year
- A matrix-like wrapper around PLINK .bed files☆19Updated last year
- Functional genomics and genome-wide association studies☆67Updated 7 years ago
- Main ricopili repo for public releases☆50Updated 6 months ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago