junyangq / snpnet
snpnet: Fast and scalable lasso/elastic-net solver for large SNP data
☆32Updated 9 months ago
Alternatives and similar repositories for snpnet:
Users that are interested in snpnet are comparing it to the libraries listed below
- Sample code for ldsc analyses in UKBB☆30Updated last year
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆50Updated 2 years ago
- Generalized linear Mixed Model Association Tests☆41Updated last year
- Learn and validate subtypes from multiple traits☆20Updated 3 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 5 months ago
- QTL Discovery using Annotations☆24Updated 2 years ago
- ☆22Updated 8 years ago
- Repository for resources we'd like to share with the community.☆24Updated 2 years ago
- software package for integrative genetic association analysis☆34Updated last year
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆33Updated 7 years ago
- Effective Computing—Resources for Computational Biologists☆26Updated 4 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆30Updated last year
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- Get SNP proxies from the 1000 Genomes Project.☆28Updated 6 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- LASSO for GWAS with summary statistics☆74Updated 4 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 5 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆50Updated 6 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆33Updated last month
- Scripts used for generating Neale Lab UKB results☆19Updated 2 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- Functional genomics and genome-wide association studies☆66Updated 6 years ago
- Independent Hypothesis Weighting☆15Updated last year
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 3 months ago
- Genetics ToolboX R package☆31Updated 5 years ago
- Glimma R package☆50Updated 6 months ago
- ☆25Updated 10 months ago
- A matrix-like wrapper around PLINK .bed files☆18Updated 6 months ago
- Main ricopili repo for public releases☆45Updated 3 weeks ago