A high-fidelity E. coli RNA-seq compendium
☆33Mar 5, 2021Updated 4 years ago
Alternatives and similar repositories for precise-db
Users that are interested in precise-db are comparing it to the libraries listed below
Sorting:
- Python package for analyzing and visualizing iModulons☆14Feb 23, 2026Updated last week
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- ☆11Aug 3, 2018Updated 7 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 3 years ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- Analysis of Single Cell Expression, Normalization and Differential expression☆13Feb 29, 2020Updated 6 years ago
- customizable robust Independent Component Analysis (ICA)☆12Sep 16, 2024Updated last year
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Apr 6, 2021Updated 4 years ago
- Javascript package for embedding sequence logos☆17Jun 16, 2025Updated 8 months ago
- Repository for the Anczukow-Lab splicing pipeline☆17Mar 17, 2025Updated 11 months ago
- ☆15Oct 28, 2020Updated 5 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Dec 19, 2023Updated 2 years ago
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 3 years ago
- ☆15Jan 10, 2023Updated 3 years ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Aug 9, 2019Updated 6 years ago
- ☆17May 15, 2024Updated last year
- Color DNA/RNA bases in terminal output☆21Aug 29, 2017Updated 8 years ago
- Python implementation for investigating the reliability of ICA estimates by clustering and visualization☆19Apr 21, 2022Updated 3 years ago
- ☆20Jun 10, 2024Updated last year
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆25Dec 5, 2024Updated last year
- Master of Pores 2☆23Dec 4, 2024Updated last year
- ☆19Mar 21, 2024Updated last year
- Snakemake pipeline for microexon discovery and quantification☆20Jan 16, 2025Updated last year
- ☆11Jul 3, 2022Updated 3 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Jan 30, 2026Updated last month
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Mar 24, 2021Updated 4 years ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Jan 31, 2026Updated last month
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Jun 8, 2021Updated 4 years ago
- Somatic indel discovery tool for tumor RNA-Seq data.☆24Nov 21, 2025Updated 3 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Aug 9, 2025Updated 6 months ago
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆27Oct 6, 2023Updated 2 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 3 years ago
- ☆26May 9, 2022Updated 3 years ago
- GATK4 Best Practice Nextflow Pipeline☆33Jan 18, 2018Updated 8 years ago
- splicing and feature maps for RBPs☆25Apr 19, 2022Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year