dkobak / tsne-umap-init
Initialization is critical for preserving global data structure in both t-SNE and UMAP
☆22Updated 4 years ago
Alternatives and similar repositories for tsne-umap-init:
Users that are interested in tsne-umap-init are comparing it to the libraries listed below
- ☆10Updated 3 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆58Updated 4 years ago
- Probabilistic contrastive principal component analysis (PCPCA)☆24Updated 3 years ago
- Fast Laplacian Eigenmaps: lightweight multicore LE for non-linear dimensional reduction with minimal memory usage. Outperforms sklearn's …☆23Updated 3 years ago
- Attraction-Repulsion Spectrum in Neighbor Embeddings☆30Updated 2 years ago
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 4 years ago
- A Bayesian group factor model with structured sparsity☆20Updated 9 years ago
- A Python package for General Graphical Lasso computation☆32Updated 2 months ago
- Code repository for the paper "Towards a Comprehensive Evaluation of Dimension Reduction Methods for Data Visualization"☆11Updated 7 months ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 2 years ago
- Perform inference on algorithm-agnostic variable importance in Python☆20Updated 2 years ago
- Latent spaces for single cells☆21Updated last year
- c-lasso: a Python package for constrained sparse regression and classification☆32Updated 3 years ago
- Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…☆18Updated 2 years ago
- ☆14Updated 3 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆39Updated 2 years ago
- A spectral method for assessing and combining multiple data visualizations☆49Updated last year
- Graph regularized nonnegative matrix factorization (GNMF) in Python☆45Updated 4 years ago
- Code for the paper on t-SNE with variable degree of freedom☆24Updated 4 years ago
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆13Updated 6 months ago
- R package for dimensionality reduction of small datasets☆68Updated last month
- Testing if UMAP/tSNE overfit their intrinsic dimensionality☆14Updated last year
- Contrastive Poisson latent variable models (CPLVMs)☆11Updated 3 years ago
- False discovery rate smoothing☆13Updated 4 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆21Updated 5 months ago
- Use LSTM neural network for 1D distributional data prediction☆22Updated 2 years ago
- Inference in Bayesian Networks with R☆11Updated 2 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated last year
- PyTorch implementation of the paper "Neural Decomposition: Functional ANOVA with Variational Autoencoders"☆25Updated 4 years ago
- This Repository Contains the Source Code for the Python Implementation of Self Organizing Nebulous Growths☆23Updated last year