lh3 / bioseq-js
For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml
☆38Updated 5 years ago
Alternatives and similar repositories for bioseq-js:
Users that are interested in bioseq-js are comparing it to the libraries listed below
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated 4 months ago
- Fast and accurate sequence demultiplexing☆27Updated last month
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆46Updated 5 years ago
- Protein Alignment and Detection Interface☆61Updated 11 months ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆46Updated 7 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Maximum likelihood demultiplexing☆46Updated last month
- A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.☆19Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- ☆82Updated 3 years ago
- Public Health England SNP calling pipeline.☆36Updated 6 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- A collection of modules and sub-workflows for Nextflow☆26Updated last week
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆93Updated 2 years ago
- Understand your transcriptome assembly☆101Updated last year
- Amplicon Sequencing Analysis Pipeline☆15Updated 3 months ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli☆23Updated 6 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago