Alternatives and similar repositories for bioseq-js

Users that are interested in bioseq-js are comparing it to the libraries listed below

• sfu-compbio / deez

  View on GitHub
  DeeNA Zip (SAM/BAM compression tool)
  ☆13May 25, 2019Updated 6 years ago
• GregoryFaust / SVsim

  View on GitHub
  SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.
  ☆18Dec 4, 2017Updated 8 years ago
• lh3 / naivepca

  View on GitHub
  Naive PCA for genotype data
  ☆10Jul 27, 2016Updated 9 years ago
• bobverity / MavericK

  View on GitHub
  Source code for the program MavericK, described fully at www.bobverity.com/maverick
  ☆12Jun 21, 2018Updated 7 years ago
• simonsmith / react-commonjs-example

  View on GitHub
  Example code from http://simonsmith.io/writing-react-components-as-commonjs-modules/
  ☆18Jan 21, 2014Updated 12 years ago
• tanghaibao / rust-wfa2

  View on GitHub
  Rust binding for WFA2-lib
  ☆10Jun 7, 2022Updated 3 years ago
• Malfoy / PAC

  View on GitHub
  ☆10Feb 23, 2024Updated last year
• tiagoantao / genomics-notebooks

  View on GitHub
  IPython notebooks to teach Genomics and Population Genetics
  ☆21Feb 13, 2017Updated 9 years ago
• enormandeau / gawn

  View on GitHub
  Genome Annotation Without Nightmares
  ☆46Feb 2, 2026Updated last week
• lauterbur / Flex-sweep

  View on GitHub
  Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.
  ☆15Mar 1, 2024Updated last year
• SainanLuo / multiMotif

  View on GitHub
  Scanning and visualization for variable gap motifs.
  ☆18Aug 6, 2024Updated last year
• NDBL / HECIL

  View on GitHub
  Hybrid Error Correction of Long Reads using Iterative Learning
  ☆10Sep 27, 2018Updated 7 years ago
• orangeSi / pymsaploter

  View on GitHub
  plot Multiple Sequence Alignment(MSA) of Clustal by python package
  ☆14Mar 14, 2023Updated 2 years ago
• bionode / bionode-fasta

  View on GitHub
  Streamable FASTA parser.
  ☆14Nov 19, 2019Updated 6 years ago
• jradrion / TEFLoN

  View on GitHub
  TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.
  ☆13Mar 5, 2021Updated 4 years ago
• merlebehr / treeSeg

  View on GitHub
  Implementation of the treeSeg algorithm as an R package.
  ☆14Feb 2, 2026Updated last week
• Shamir-Lab / Faucet

  View on GitHub
  This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…
  ☆18May 21, 2017Updated 8 years ago
• ihh / trajectory-likelihood

  View on GitHub
  Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)
  ☆14Sep 17, 2022Updated 3 years ago
• lh3 / bfc

  View on GitHub
  High-performance error correction for Illumina resequencing data
  ☆74May 31, 2016Updated 9 years ago
• poreathon / poreathon

  View on GitHub
  Pipeline for poreathon
  ☆14Dec 17, 2014Updated 11 years ago
• lh3 / proot-wrapper

  View on GitHub
  Demonstrating the PRoot program
  ☆11Jul 29, 2016Updated 9 years ago
• NESCent / MINOTAUR

  View on GitHub
  Multivariate vIsualisatioN and OuTlier Analysis Using R
  ☆14Apr 8, 2023Updated 2 years ago
• edawson / svaha

  View on GitHub
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆11Mar 6, 2024Updated last year
• wtsi-svi / ReadServer

  View on GitHub
  Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)
  ☆14Sep 23, 2017Updated 8 years ago
• Gaius-Augustus / clamsa

  View on GitHub
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆13Nov 21, 2024Updated last year
• koszullab / GRAAL

  View on GitHub
  (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-qualit…
  ☆15Nov 22, 2022Updated 3 years ago
• DessimozLab / phylo-io

  View on GitHub
  Phylo.IO JS tree viewer
  ☆35Jan 21, 2026Updated 3 weeks ago
• vpc-ccg / calib

  View on GitHub
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆40Jun 6, 2023Updated 2 years ago
• Oshlack / STRetch

  View on GitHub
  Method for detecting STR expansions from short-read sequencing data
  ☆63Dec 15, 2021Updated 4 years ago
• md5sam / Falcon2Fastg

  View on GitHub
  Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage
  ☆13May 16, 2016Updated 9 years ago
• ssadedin / bazam

  View on GitHub
  A read extraction and realignment tool for next generation sequencing data
  ☆104Oct 29, 2022Updated 3 years ago
• enormandeau / mapcomp

  View on GitHub
  Genetic Map Comparison
  ☆20Nov 10, 2022Updated 3 years ago
• Jverma / GATK-pipeline

  View on GitHub
  A shell script which implements GATK pipeline for variant calling.
  ☆15Nov 30, 2014Updated 11 years ago
• nextgenusfs / redmask

  View on GitHub
  Genome assembly soft-masking using Red (REpeat Detector)
  ☆18Dec 7, 2018Updated 7 years ago
• hopkinsmarinestation / Population-Genomics-via-RNAseq

  View on GitHub
  Guide to transcriptome assembly & analysis
  ☆21Apr 12, 2017Updated 8 years ago
• hammerlab / pileup.js

  View on GitHub
  Interactive in-browser track viewer
  ☆280Oct 26, 2021Updated 4 years ago
• pblischak / polyploid-genotyping

  View on GitHub
  SNP genotyping in polyploids
  ☆17Aug 12, 2020Updated 5 years ago
• algbio / matchtigs

  View on GitHub
  Minimum plain text representation of kmer sets
  ☆16Jan 30, 2025Updated last year
• viq854 / bwbble

  View on GitHub
  Read alignment with a multi-genome reference
  ☆23Jan 14, 2020Updated 6 years ago