opencb / genome-mapsLinks
An open-source high-performance web-based HTML5 genome browser. Genome Maps can be customized and allow browsing user data such as BAM and VCF files among other formats.
☆38Updated 7 years ago
Alternatives and similar repositories for genome-maps
Users that are interested in genome-maps are comparing it to the libraries listed below
Sorting:
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 3 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- HTML5 scrollable genome browser☆111Updated 2 years ago
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago
- Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)☆41Updated 2 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆84Updated 3 weeks ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 5 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆35Updated 6 months ago
- Assembly Based ReAligner☆74Updated 7 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆88Updated 6 years ago
- ☆83Updated 3 years ago
- An awk-like VCF parser☆56Updated 2 years ago
- ☆96Updated 3 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- NextSeq specific bcl2fastq2 wrapper.☆55Updated 4 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆68Updated 11 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Updated 5 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆63Updated 2 weeks ago
- An Oxford Nanopore Basecaller☆70Updated 4 years ago
- NEAT read simulation tools☆101Updated 3 years ago