opencb / genome-maps
An open-source high-performance web-based HTML5 genome browser. Genome Maps can be customized and allow browsing user data such as BAM and VCF files among other formats.
☆39Updated 5 years ago
Related projects: ⓘ
- Reduced Alphabet based Protein similarity Search☆40Updated 3 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 5 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated last week
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆54Updated 7 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆81Updated 7 months ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 3 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆78Updated last year
- The gkno launcher for executing tools or pipelines☆32Updated 7 years ago
- For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml☆37Updated 5 years ago
- ☆49Updated last year
- Utilities to create and analyze gVCF files☆39Updated 7 years ago
- Genome-wide reconstruction of complex structural variants☆40Updated 2 years ago
- Data from the Human PanGenomics Project☆60Updated 3 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆46Updated 5 years ago
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago
- The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute☆31Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated last year
- de novo virus assembler of Illumina paired reads☆53Updated 3 years ago
- Toolkit to analyze genomic variation data, built on the GATK with Clojure☆66Updated 8 years ago
- k-mer counting software☆38Updated 2 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated last year
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 4 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Updated 5 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆83Updated last week
- Estimating k-mer coverage histogram of genomics data☆76Updated 9 months ago
- An awk-like VCF parser☆54Updated 8 months ago