opencb / genome-mapsLinks
An open-source high-performance web-based HTML5 genome browser. Genome Maps can be customized and allow browsing user data such as BAM and VCF files among other formats.
☆38Updated 7 years ago
Alternatives and similar repositories for genome-maps
Users that are interested in genome-maps are comparing it to the libraries listed below
Sorting:
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆63Updated last week
- Assembly Based ReAligner☆74Updated 7 years ago
- ☆95Updated 3 years ago
- HTML5 scrollable genome browser☆111Updated last year
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆67Updated 11 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆88Updated 6 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- ☆54Updated 5 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆107Updated 3 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 5 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- An Oxford Nanopore Basecaller☆70Updated 4 years ago
- Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)☆40Updated 2 years ago
- Utilities to create and analyze gVCF files☆38Updated 8 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆84Updated 2 months ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆87Updated 7 years ago
- The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute☆31Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml☆39Updated 6 years ago