MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.
☆16Mar 2, 2023Updated 3 years ago
Alternatives and similar repositories for metamlst
Users that are interested in metamlst are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jan 5, 2018Updated 8 years ago
- A microbial profiling framework for metagenomic analysis☆24Apr 9, 2020Updated 5 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Jun 23, 2022Updated 3 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Jan 24, 2025Updated last year
- ☆32Updated this week
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Oct 14, 2024Updated last year
- Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks☆17Mar 10, 2026Updated last week
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Oct 10, 2025Updated 5 months ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Feb 17, 2021Updated 5 years ago
- ☆18Jun 11, 2024Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Apr 16, 2024Updated last year
- An easy way of MLSTyping your genomes in R.☆19Dec 21, 2020Updated 5 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 4 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆22May 8, 2024Updated last year
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- Find Co-Abundant Groups of Genes☆11Aug 3, 2020Updated 5 years ago
- ☆21May 6, 2025Updated 10 months ago
- ☆16Nov 16, 2023Updated 2 years ago
- Some ideas on things to learn to get started with bioinformatics☆19Dec 5, 2022Updated 3 years ago
- ☆12May 6, 2022Updated 3 years ago
- ☆15Jun 26, 2025Updated 8 months ago
- ☆13Jul 4, 2023Updated 2 years ago