leiwaaping / GATK_demoLinks
a gatk4 pipeline with NA12878 demo dateset ,conda environment used(no GPU)
☆15Updated 6 years ago
Alternatives and similar repositories for GATK_demo
Users that are interested in GATK_demo are comparing it to the libraries listed below
Sorting:
- microRNA PREdiction From small RNA-seq data☆30Updated 7 years ago
- ☆27Updated 3 years ago
- ☆23Updated 3 years ago
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆16Updated 3 months ago
- The cattle Genotype-Tissue Expression atlas v1☆28Updated 2 years ago
- ☆16Updated 3 years ago
- Design gene specific KASP and CAPS/dCAPS primers for any species☆17Updated 3 years ago
- IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆18Updated 7 years ago
- lncRNA-screen☆25Updated 8 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 8 months ago
- ☆14Updated 7 years ago
- Structural variant merging tool☆57Updated last year
- ☆21Updated 3 years ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- iTAK☆45Updated last year
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Updated last year
- A pipeline for isoseq☆23Updated 7 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆33Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- ☆20Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated last month
- ☆25Updated 4 months ago
- scripts used for processing and analyzing data in the article.☆13Updated 6 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- ☆38Updated 2 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year