a gatk4 pipeline with NA12878 demo dateset ,conda environment used(no GPU)
☆15Aug 28, 2019Updated 6 years ago
Alternatives and similar repositories for GATK_demo
Users that are interested in GATK_demo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 8 months ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Nov 24, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated 9 months ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 9 months ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆12Feb 7, 2025Updated last year
- ☆11May 10, 2025Updated 10 months ago
- Bioinformatics with R cookbook☆12Apr 3, 2019Updated 6 years ago
- MitoDNA extending assembler from NGS data☆22Mar 19, 2026Updated last week
- ☆29Apr 16, 2023Updated 2 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- ☆27May 8, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- 整合型的对于生物学注释的信息/GO和KEGG全谱注释和富集☆14Nov 8, 2017Updated 8 years ago
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆12Sep 3, 2024Updated last year
- R package for processing of GWAS output☆16Jul 9, 2024Updated last year
- Scripts to Analyze DTC Sequencing and Genotyping Data (and some comparisons to Veritas WGS data)☆20Nov 28, 2024Updated last year
- ☆19Nov 7, 2024Updated last year
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- Free-access R books for beginners. Welcome to Fork it. Commercial use is forbidden!☆14Sep 16, 2018Updated 7 years ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pipeline for Somatic Variant Calling with WES and WGS data☆24May 7, 2024Updated last year
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆36Jul 5, 2025Updated 8 months ago
- Mitochondrial Genome Assembly☆17Feb 21, 2024Updated 2 years ago
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- Useful bioinformatic scripts☆60Feb 23, 2026Updated last month
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 3 years ago
- R Package for performing Qst-Fst analyses☆21Nov 14, 2017Updated 8 years ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 5 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Short scripts for converting genetic data between formats.☆30Nov 11, 2022Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆38Mar 13, 2025Updated last year
- ☆15Dec 29, 2025Updated 3 months ago
- Portable database of microhaplotype marker and allele frequency data☆11Oct 2, 2025Updated 5 months ago
- Nextflow DSL2 pipeline to call variants on long read alignment.☆11Feb 27, 2026Updated last month
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year
- ☆14May 22, 2025Updated 10 months ago