a gatk4 pipeline with NA12878 demo dateset ,conda environment used(no GPU)
☆15Aug 28, 2019Updated 6 years ago
Alternatives and similar repositories for GATK_demo
Users that are interested in GATK_demo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 10 months ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Nov 24, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated 11 months ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 11 months ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆12Feb 7, 2025Updated last year
- ☆11Apr 25, 2026Updated last month
- Bioinformatics with R cookbook☆12Apr 3, 2019Updated 7 years ago
- MitoDNA extending assembler from NGS data☆23Mar 19, 2026Updated 2 months ago
- ☆30Apr 16, 2023Updated 3 years ago
- ☆27May 8, 2022Updated 4 years ago
- 整合型的对于生物学注释的信息/GO和KEGG全谱注释和富集☆14Nov 8, 2017Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆12Sep 3, 2024Updated last year
- R package for processing of GWAS output☆17Jul 9, 2024Updated last year
- Scripts to Analyze DTC Sequencing and Genotyping Data (and some comparisons to Veritas WGS data)☆20Nov 28, 2024Updated last year
- ☆19Nov 7, 2024Updated last year
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- Free-access R books for beginners. Welcome to Fork it. Commercial use is forbidden!