Alternatives and similar repositories for ConSurf-StandAlone

Users that are interested in ConSurf-StandAlone are comparing it to the libraries listed below

• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆73Updated 2 years ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆47Updated 3 years ago
• ntranoslab / esm-variants
  ☆80Updated 2 years ago
• nleroy917 / optipyzer
  Multi-Species Codon Optimization Engine
  ☆27Updated 2 months ago
• haiyuan-yu-lab / PIONEER
  ☆27Updated 9 months ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 6 years ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated last week
• X-lab-3D / PANDORA
  MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline
  ☆24Updated 3 months ago
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆17Updated last month
• Profluent-AI / CRISPR-Cas-Atlas
  An atlas of CRISPR-Cas systems from systematic genome mining
  ☆19Updated 2 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆41Updated last year
• samsledje / philharmonic
  Decoding the functional networks of non-model organisms
  ☆11Updated 2 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆44Updated 2 years ago
• walterlab-HMS / SPOC
  Code repository for the SPOC tool for scoring binary AF-M predicitons.
  ☆13Updated 5 months ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆25Updated 2 weeks ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆47Updated 6 years ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 8 months ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• normandavey / AlphaFold2-IDR-complex-prediction
  ☆39Updated 4 years ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆53Updated 11 months ago
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆35Updated 3 weeks ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• drgoulet / Codon-optimization
  Use machine learning to design codon-optimized DNA sequences for increased protein expression.
  ☆15Updated 3 years ago
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated 2 years ago
• allydunham / sequence_unet
  Fully convolutional deep learning variant effect predictor architecture
  ☆23Updated last year
• teevee112 / DeepLoc-2.0
  Multi-label subcellular localization and sorting signal prediction based on protein foundation models
  ☆20Updated last year
• kad-ecoli / python_scripts
  scripts for parsing PDB, fasta, and GO
  ☆16Updated 3 years ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆95Updated 8 months ago