Simple interval class for fast fasta access
☆10Jun 18, 2012Updated 14 years ago
Alternatives and similar repositories for fastinterval
Users that are interested in fastinterval are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DEPRECATED Lightweight bioinformatics pipeline tools using iPython☆14Dec 11, 2015Updated 10 years ago
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Copy number estimation of highly duplicated sequences☆12Aug 15, 2017Updated 9 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆24Apr 15, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- indel haplotype visualization on the command line from BAM files☆12Mar 12, 2014Updated 12 years ago
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago
- ☆17Sep 24, 2013Updated 13 years ago
- Interface between matplotlib and plotly☆13Jun 26, 2014Updated 12 years ago
- python wrapper to submit jobs to bsub (and later qsub)☆43Nov 12, 2021Updated 4 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 11 years ago
- Infrastructure code to support DNA pipeline☆38May 5, 2015Updated 11 years ago
- franklin library for NGS sequencing analysis.☆25Oct 10, 2012Updated 14 years ago
- A package for simulating RNA-seq library preparation with parameter estimation☆23Mar 3, 2014Updated 12 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 8 months ago
- ☆19Jul 15, 2026Updated 3 months ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Oct 14, 2026Updated 3 weeks ago
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 11 years ago
- Analyze exome data for Mendelian disorders. Still in alpha-testing.☆10Apr 13, 2016Updated 10 years ago
- Process management library☆18Aug 17, 2022Updated 4 years ago
- example ruffus pipeline☆18Sep 30, 2011Updated 15 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Creates a rarefaction curve to measure complexity in RNA Seq data using start position☆13Apr 2, 2017Updated 9 years ago
- vcf file manipulation☆22Jul 9, 2015Updated 11 years ago
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Jun 22, 2015Updated 11 years ago
- Biological Graphic tool in Python☆34May 14, 2020Updated 6 years ago
- A client for the Ensembl REST API written in the Python programming language☆29Oct 7, 2026Updated last month
- A thorough, straightforward, un-intimidating introduction to Gaussian processes in NumPy.☆15Jun 12, 2018Updated 8 years ago
- A Ruffus pipeline for Analysis of High-Throughput Sequencing data☆12Apr 3, 2013Updated 13 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 9 years ago
- python stuff I use☆21Feb 16, 2026Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A suite of javascript apps for visualizing sequencing data☆12Nov 18, 2013Updated 12 years ago
- ☆21Dec 26, 2025Updated 10 months ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 5 months ago
- A Python interface to the BEDTools API using Cython☆28Mar 16, 2011Updated 15 years ago
- collection of small scripts or how-tos that don't fall under a separate project☆20Oct 18, 2017Updated 9 years ago
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- Library for visualising genomic features in Python.☆16May 12, 2017Updated 9 years ago