Alternatives and similar repositories for trimReads

Users that are interested in trimReads are comparing it to the libraries listed below

• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆55Updated 5 years ago
• arq5x / bedtools-protocols
  ☆78Updated 11 years ago
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆85Updated 7 years ago
• cc2qe / vawk
  An awk-like VCF parser
  ☆56Updated 2 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• s-andrews / BamQC
  Mapped QC analysis program
  ☆44Updated 7 years ago
• biocore-ntnu / epic
  (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
  ☆31Updated 7 years ago
• salmonteam / SalmonBlogResponse
  Response to blog post about Salmon
  ☆37Updated 8 years ago
• walaj / bxtools
  Tools for analyzing 10X Genomics data
  ☆42Updated 6 years ago
• slowkow / picardmetrics
  Run Picard on BAM files and collate 90 metrics into one file.
  ☆40Updated 8 years ago
• stephenturner / adapters
  Adapters for trimming
  ☆30Updated 6 years ago
• seandavi / GFFutils
  Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach
  ☆36Updated 15 years ago
• slzhao / QC3
  QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.
  ☆32Updated 9 years ago
• AlistairNWard / vcfPytools
  vcf file manipulation
  ☆22Updated 10 years ago
• andrej-fischer / cloneHD
  High-definition reconstruction of clonal composition from next-generation sequencing data
  ☆42Updated 9 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆30Updated 4 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated 2 years ago
• pachterlab / metakallisto
  Using kallisto for metagenomic analysis
  ☆49Updated 9 years ago
• bcbio / bcbio_validations
  Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
  ☆31Updated 3 years ago
• GenomiqueENS / dockerfiles
  ☆83Updated 3 years ago
• relipmoc / skewer
  ☆96Updated 3 years ago
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 9 years ago
• statgen / gotcloud
  Genomes on the Cloud, Mapping & Variant Calling Pipelines
  ☆33Updated 8 years ago
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆50Updated last month
• Ettwiller / Damage-estimator
  Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…
  ☆54Updated 8 years ago
• Molmed / checkQC
  CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
  ☆29Updated last month
• walaj / VariantBam
  Filtering and profiling of next-generational sequencing data using region-specific rules
  ☆79Updated 2 years ago
• najoshi / sabre
  ☆63Updated 5 years ago