tanghaibao / trimReadsLinks
Utility programs to trim or sort Illumina reads with adapter sequences
☆15Updated 12 years ago
Alternatives and similar repositories for trimReads
Users that are interested in trimReads are comparing it to the libraries listed below
Sorting:
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Tools for bam file processing☆55Updated 10 years ago
- ☆78Updated 11 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 14 years ago
- An awk-like VCF parser☆56Updated last year
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- 10x Genomics Reads Simulator☆46Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Response to blog post about Salmon☆37Updated 8 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 8 years ago
- Fast fusion detection using kallisto☆79Updated 5 months ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Smart VCF parser DSL☆83Updated 3 years ago
- vcf file manipulation☆22Updated 10 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 11 months ago
- conda recipes for genomic data☆84Updated 4 years ago