A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics
☆14Feb 12, 2016Updated 10 years ago
Alternatives and similar repositories for hpg-variant
Users that are interested in hpg-variant are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- processing illumina SNP arrays☆20Feb 3, 2017Updated 9 years ago
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 9 years ago
- Software for creating and comparing genome fingerprints.☆11Sep 28, 2026Updated last month
- AlphaImpute2: pedigree- and population-based genotype imputation☆15Aug 24, 2026Updated 2 months ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆45Mar 31, 2026Updated 6 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated last year
- Pathogenicity prediction and prioritization of genetic variants.☆20Sep 21, 2026Updated last month
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Apr 13, 2018Updated 8 years ago
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Mar 15, 2017Updated 9 years ago
- Visualizing genetic sequence variation☆14Apr 27, 2020Updated 6 years ago
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆17Aug 9, 2018Updated 8 years ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 10 years ago
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A simple observation count database☆11Updated this week
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- Perl scripts for manipulating output from phylogenetic MCMC software (MrBayes, BEAST, PhyloBayes, etc)☆12Apr 15, 2020Updated 6 years ago
- script that convert vcf file into genotype data matrix to input DIYABC program.☆12Jul 9, 2015Updated 11 years ago
- Demographic analysis of Brassica oleracea☆10May 19, 2026Updated 5 months ago
- Atwell et al data☆11Jan 16, 2019Updated 7 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 10 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆18Mar 10, 2018Updated 8 years ago
- ☆12Mar 11, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Readme☆10Mar 15, 2020Updated 6 years ago
- Code and example datasets for Does[0]Compute☆12Dec 2, 2021Updated 4 years ago
- Welcome to Physcraper’s repository! Automatic gene tree updating using the Open Tree of Life.☆13May 13, 2022Updated 4 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 8 years ago
- Simple Python program to perform codon optimization or heterology calculations.☆12Apr 13, 2021Updated 5 years ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Jan 11, 2021Updated 5 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- R package to run BEAST2☆11Dec 8, 2025Updated 10 months ago
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Mathematica pipeline for genetic analysis in multiparental populations☆13Jan 7, 2025Updated last year
- R package to process BUS files☆11Mar 18, 2026Updated 7 months ago
- Compute the Euler Characteristic Transform☆17Oct 18, 2023Updated 3 years ago
- This is a read-only mirror of the CRAN R package repository. PopGenome — An Efficient Swiss Army Knife for Population Genomic Analyses …☆16Feb 3, 2020Updated 6 years ago
- R Interfaces to Phylogenetic Software☆12Jun 25, 2026Updated 4 months ago
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 3 years ago
- R package for querying the OMIM database☆17Sep 14, 2025Updated last year