opencb / hpg-variantLinks
A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics
☆13Updated 9 years ago
Alternatives and similar repositories for hpg-variant
Users that are interested in hpg-variant are comparing it to the libraries listed below
Sorting:
- TOPMed analysis pipeline☆52Updated 2 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated 2 weeks ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Updated 2 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- ☆78Updated 11 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Nanopore desc☆18Updated 9 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- An awk-like VCF parser☆56Updated last year
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Guide to transcriptome assembly & analysis☆21Updated 8 years ago
- R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)☆109Updated last month
- BrowseVCF is a web-based application and workflow to quickly prioritise disease-causative variants in VCF files.☆47Updated 5 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Estimate recombination rates from population genetic data☆69Updated 5 years ago
- Fast and accurate sequence demultiplexing☆28Updated 5 months ago
- The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute☆31Updated 4 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 3 weeks ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆65Updated 2 weeks ago