Python code to read/write .annotation files from Halo
☆10Feb 19, 2025Updated last year
Alternatives and similar repositories for pyhaloxml
Users that are interested in pyhaloxml are comparing it to the libraries listed below
Sorting:
- Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands Cancer Institute☆28Jan 31, 2026Updated last month
- ImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells☆22Dec 9, 2025Updated 2 months ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated 9 months ago
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Feb 15, 2022Updated 4 years ago
- Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.☆12May 13, 2022Updated 3 years ago
- Image reconstruction from human brain activity by VAE and adversarial learning☆12May 21, 2022Updated 3 years ago
- Spotiflow plugin for napari☆15Feb 2, 2026Updated last month
- A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging format…☆14Feb 20, 2026Updated last week
- The Detectron 2 MaskRCNN implementation for the PanNuke Dataset (https://jgamper.github.io/PanNukeDataset/).☆13Jun 25, 2021Updated 4 years ago
- arknights 关卡 ocr & 库存物品识别☆14Feb 24, 2026Updated last week
- Predicting Ovarian Cancer Treatment Response in Histopathology using Hierarchical Vision Transformers and Multiple Instance Learning☆12Nov 29, 2023Updated 2 years ago
- QuPath extension for Segment Anything Model (SAM)☆128Feb 15, 2026Updated 2 weeks ago
- Create analysis reports from inForm data.☆15Nov 9, 2023Updated 2 years ago
- Modular, object-based analysis for ImageJ/Fiji☆16Feb 23, 2026Updated last week
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆16Feb 23, 2026Updated last week
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆19Mar 11, 2025Updated 11 months ago
- ☆12Apr 20, 2023Updated 2 years ago
- Image Cytometry Standard file reading and writing.☆18Jan 5, 2026Updated last month
- Computer-aided diagnosis in histopathological images of the Endometrium☆20Jun 6, 2020Updated 5 years ago
- Ahcore is the AI for Oncology core computational pathology toolkit☆16Oct 3, 2024Updated last year
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- Training/Evaluation code for HoVer-NeXt☆17Nov 2, 2025Updated 4 months ago
- BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)☆14Dec 15, 2025Updated 2 months ago
- Adapted nnUNet framework with additional features to suit the requirements for pathology applications☆23Updated this week
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- FOSS Resources for Spectroscopy☆21Nov 25, 2025Updated 3 months ago
- Python scripts library for Aivia. Ask your questions on the forum >>☆14Feb 18, 2026Updated last week
- ☆21Sep 4, 2020Updated 5 years ago
- Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940☆16Mar 22, 2018Updated 7 years ago
- Tensorflow.js + Vue.js starter project template.☆16Jun 21, 2018Updated 7 years ago
- mcib3d core library for 3D ImageJ suite☆15Oct 6, 2022Updated 3 years ago
- ☆21Jul 20, 2023Updated 2 years ago
- mini-spring 手写简易Spring,分为两个版本,一个为简易版,通过30个类实现了各种功能,便于理解。一个为规范版,按照Spring源码实现的设计模式来进行构造的。代码中都具有注释,可以学习spring进行参考。☆23Jul 23, 2023Updated 2 years ago
- Reconstruction of 3D volumetric dataset from a collection of 2D slices☆25Dec 28, 2020Updated 5 years ago
- CONSNet: Convolutional Neural Networks for Skull-stripping in Brain MR Imaging using Consensus-based Silver Standard Masks☆17Jul 24, 2019Updated 6 years ago
- The official QuPath extension for InstanSeg☆29Jan 21, 2026Updated last month
- diffusion_video_paper_list☆27May 24, 2025Updated 9 months ago
- Create web-based OME-Zarr galleries☆22Nov 6, 2025Updated 3 months ago
- ☆19Jul 4, 2023Updated 2 years ago