Python code to read/write .annotation files from Halo
☆10Feb 19, 2025Updated last year
Alternatives and similar repositories for pyhaloxml
Users that are interested in pyhaloxml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells☆23May 26, 2026Updated 4 months ago
- Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands Cancer Institute☆30Aug 9, 2026Updated 2 months ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆20Mar 11, 2025Updated last year
- arknights 关卡 ocr & 库存物品识别☆14Sep 29, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- QuPath extension for Segment Anything Model (SAM)☆137Feb 15, 2026Updated 7 months ago
- Image reconstruction from human brain activity by VAE and adversarial learning☆12May 21, 2022Updated 4 years ago
- Ahcore is the AI for Oncology core computational pathology toolkit☆17Oct 3, 2024Updated 2 years ago
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Feb 15, 2022Updated 4 years ago
- Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.☆13May 13, 2022Updated 4 years ago
- A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging format…☆14Jul 18, 2026Updated 2 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆42Jun 29, 2026Updated 3 months ago
- 🚀 A powerful library for efficient training of Neural Fields at scale.☆31Jan 22, 2024Updated 2 years ago
- IHC-image analysis workflow☆25May 29, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Image Cytometry Standard file reading and writing.☆18Sep 28, 2026Updated 2 weeks ago
- ☆21Jul 20, 2023Updated 3 years ago
- Modular image and object analysis workflows for ImageJ/Fiji☆17Sep 24, 2026Updated 2 weeks ago
- Predicting Ovarian Cancer Treatment Response in Histopathology using Hierarchical Vision Transformers and Multiple Instance Learning☆13Nov 29, 2023Updated 2 years ago
- The Detectron 2 MaskRCNN implementation for the PanNuke Dataset (https://jgamper.github.io/PanNukeDataset/).☆14Jun 25, 2021Updated 5 years ago
- ☆38Mar 12, 2026Updated 7 months ago
- Create analysis reports from inForm data.☆16Nov 9, 2023Updated 2 years ago
- mini-spring 手写简易Spring，分为两个版本，一个为简易版，通过30个类实现了各种功能，便于理解。一个为规范版，按照Spring源码实现的设计模式来进行构造的。代码中都具有注释，可以学习spring进行参考。☆24Sep 26, 2026Updated 2 weeks ago
- FOSS Resources for Spectroscopy☆21Nov 25, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- VQVAE | VAE | GumbelVAE | PixelCNN☆20Jun 15, 2020Updated 6 years ago
- BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)☆15Oct 5, 2026Updated last week
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆16Sep 26, 2021Updated 5 years ago
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- ☆12Apr 20, 2023Updated 3 years ago
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆22Updated this week
- Create web-based OME-Zarr galleries☆31Jul 7, 2026Updated 3 months ago
- Training/Evaluation code for HoVer-NeXt☆19Aug 26, 2026Updated last month
- Segment Anything Model API☆118Feb 15, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Trained a Multi-Layer Perceptron, AlexNet and pre-trained InceptionV3 architectures on NVIDIA GPUs to classify Brain MRI images into meni…☆35Oct 6, 2022Updated 4 years ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆97Jul 6, 2026Updated 3 months ago
- mcib3d core library for 3D ImageJ suite☆16Oct 6, 2022Updated 4 years ago
- Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940☆16Mar 22, 2018Updated 8 years ago
- 3D segmentation for cells and organoids of 3D multichannel images☆34Jun 23, 2026Updated 3 months ago
- 该项目为openai的网关，实现了对接飞书聊天机器人的oauth身份验证、多api_key配置筛选、openai转发、问答存储等功能。分为三个微服务，网关、openai调用部分和mq消费者部分。☆38Jul 23, 2023Updated 3 years ago
- Tensorflow.js + Vue.js starter project template.☆16Jun 21, 2018Updated 8 years ago