zhanglab-aim / EMGNNLinks
Explainable Multilayer Graph Neural Network for Cancer Gene Prediction
☆17Updated last year
Alternatives and similar repositories for EMGNN
Users that are interested in EMGNN are comparing it to the libraries listed below
Sorting:
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆26Updated this week
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆34Updated last month
- Modeling complex perturbations with CellFlow☆57Updated this week
- ☆66Updated 10 months ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆70Updated last week
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 4 years ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆14Updated 8 months ago
- ☆29Updated 2 years ago
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆15Updated 3 months ago
- ☆20Updated 8 months ago
- Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆17Updated last year
- ☆10Updated last month
- ☆29Updated last year
- ☆59Updated 9 months ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 2 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 5 months ago
- ☆14Updated 2 years ago
- Python package to load and query ARCHS4 data☆23Updated 3 months ago
- ☆14Updated this week
- ☆28Updated last month
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆52Updated 6 months ago
- Create cell sentences from sequencing data☆22Updated 10 months ago
- CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer☆18Updated this week
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆94Updated 3 months ago
- A VGAE-based model to infer transcription factor regulatory network☆27Updated 2 years ago
- Multi-omics integration method using AE and GCN☆35Updated 2 years ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆54Updated 11 months ago
- ☆17Updated 3 years ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆28Updated 10 months ago
- Single-cell biological network inference using a heterogeneous graph transformer☆73Updated 4 months ago