mims-harvard / PINNACLELinks
Contextual AI models for single-cell protein biology
☆94Updated 9 months ago
Alternatives and similar repositories for PINNACLE
Users that are interested in PINNACLE are comparing it to the libraries listed below
Sorting:
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆129Updated 9 months ago
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆67Updated 11 months ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆56Updated 4 months ago
- ☆133Updated 7 months ago
- ☆96Updated 2 months ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated 2 years ago
- ☆24Updated last year
- ☆34Updated 10 months ago
- BulkFormer: A large-scale foundation model for human bulk transcriptomes☆31Updated last month
- Large language modeling applied to T-cell receptor (TCR) sequences.☆57Updated 3 years ago
- A visible neural network model for drug response prediction☆149Updated 2 years ago
- ☆75Updated last year
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆97Updated 2 weeks ago
- ☆37Updated 2 years ago
- Repository for mRNA Paper and CodonBERT publication.☆134Updated last year
- ProCyon: A multimodal foundation model for protein phenotypes☆50Updated this week
- ☆84Updated 3 months ago
- ☆62Updated 4 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆30Updated 4 months ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆76Updated 8 months ago
- Modeling complex perturbations with CellFlow☆98Updated last week
- Paper collection for single cell foundation models☆35Updated last year
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆99Updated last year
- ☆91Updated last year
- Primary RNA sequence model☆40Updated last year
- A deep generative neural network based approach to impute drug response☆23Updated 4 years ago
- ☆32Updated 2 months ago
- ☆25Updated last year
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated this week
- A Deep Learning based Efficacy Prediction System for drug discovery☆73Updated 3 years ago