Alternatives and similar repositories for bionumpy

Users that are interested in bionumpy are comparing it to the libraries listed below

• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated 3 weeks ago
• mragsac / BISB-Bootcamp-2021
  FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program
  ☆19Updated 3 years ago
• cmdoret / hicreppy
  Python reimplementation of hicrep with compatibility for sparse matrices
  ☆18Updated 2 years ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆25Updated last year
• paulsengroup / modle
  High-performance stochastic modeling of DNA loop extrusion interactions
  ☆17Updated 8 months ago
• jbkinney / mavenn
  MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect
  ☆27Updated this week
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 5 months ago
• JanZrimec / DeepExpression
  ☆33Updated 2 years ago
• statbiophys / SONIA
  Infer selection pressures on features of amino acid CDR3 sequences.
  ☆25Updated last year
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆27Updated last year
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆29Updated last week
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated 7 months ago
• pritykinlab / guidescan-cli
  a guideRNA database generation tool
  ☆16Updated 3 months ago
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆16Updated last year
• kundajelab / simdna
  A python library for creating simulated regulatory DNA sequences
  ☆38Updated 2 years ago
• liguowang / cpgtools
  Python package to analyze DNA methylation data
  ☆42Updated 6 months ago
• Seeliglab / 2017---Deep-learning-yeast-UTRs
  Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"
  ☆15Updated 7 years ago
• jbloomlab / dmslogo
  draw sequence logos tailored to deep mutational scanning (DMS) data
  ☆12Updated last year
• gsneha26 / urWGS
  Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5
  ☆20Updated 11 months ago
• cinquin / MEME
  MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks
  ☆10Updated 7 years ago
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated 2 months ago
• erinhwilson / promoter-id-from-rnaseq
  Computational framework to identify promoter sequences from RNA-seq datasets
  ☆10Updated last year
• bendemeo / hopper
  Diverse sampling for single-cell datasets
  ☆16Updated 4 years ago
• chaolinzhanglab / DeltaSplice
  A neural network model to predict splice site usage and splicing-altering mutations
  ☆11Updated 4 months ago
• rraadd88 / beditor
  A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
  ☆19Updated last year
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆32Updated last year
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• alevar / ORFanage
  Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…
  ☆28Updated 3 weeks ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 4 months ago