knutdrand / bionumpy
☆9Updated 11 months ago
Alternatives and similar repositories for bionumpy
Users that are interested in bionumpy are comparing it to the libraries listed below
Sorting:
- A genome browser in your Jupyter notebook☆31Updated 4 months ago
- A Python package for gene network analysis☆32Updated 2 years ago
- ☆33Updated 2 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Updated last year
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆32Updated 11 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 3 months ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆20Updated 10 months ago
- FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program☆19Updated 3 years ago
- Blazing fast toolkit to work with .hic and .cool files☆29Updated last week
- High-performance stochastic modeling of DNA loop extrusion interactions☆17Updated 8 months ago
- a guideRNA database generation tool☆16Updated 2 months ago
- ☆17Updated 9 months ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆29Updated last year
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated last month
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- ☆21Updated this week
- Universal RObust Peak Annotator☆16Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆25Updated last year
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆27Updated last month
- Python package to plot sequence logos☆29Updated last year
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆46Updated 2 weeks ago
- A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.☆18Updated last year
- A python package for showing JBrowse views☆25Updated last year
- Summary statistics for repertoires☆17Updated 2 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Updated 8 months ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated last year
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆24Updated last week
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated 2 years ago