mpg-age-bioinformatics / AGEpy
Bioinformatics tools for Python
☆25Updated 3 months ago
Alternatives and similar repositories for AGEpy:
Users that are interested in AGEpy are comparing it to the libraries listed below
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆48Updated 3 weeks ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆86Updated last week
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆45Updated 2 years ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 3 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 4 years ago
- Tools for working with BUS files☆95Updated 5 months ago
- Python biomart API☆65Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆58Updated last month
- Quantification of transposable element expression using RNA-seq☆64Updated last year
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆29Updated 3 years ago
- Interactive multiscale visualization for structural variation in human genomes☆68Updated last week
- Analysis pipeline for the GUIDE-seq assay.☆23Updated last month
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆48Updated last year
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆91Updated 7 months ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆82Updated 3 years ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- Python package to analyze DNA methylation data☆40Updated 4 months ago
- Notes on ChIP-seq and other-seq-related tools☆25Updated 2 months ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆31Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- Estimation of Promoter Activity from RNA-Seq data☆51Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- A Python library to visualize and analyze long-read transcriptomes☆58Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆73Updated 3 years ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆28Updated last week
- A continually expanding collection of RNA-seq tools☆48Updated 5 months ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆51Updated last month