mpg-age-bioinformatics / AGEpy
Bioinformatics tools for Python
☆23Updated last week
Related projects ⓘ
Alternatives and complementary repositories for AGEpy
- A simple pythonic interface to biomart.☆55Updated 4 years ago
- Python package to analyze DNA methylation data☆39Updated this week
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆62Updated 4 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆45Updated 10 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆54Updated 3 weeks ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆81Updated 3 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆39Updated last year
- Tools for working with BUS files☆92Updated last month
- A Python library to visualize and analyze long-read transcriptomes☆57Updated 8 months ago
- Quantification of transposable element expression using RNA-seq☆64Updated 9 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆76Updated 3 months ago
- Analysis pipeline for the GUIDE-seq assay.☆23Updated 3 months ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆30Updated last month
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆45Updated last month
- Notes on ChIP-seq and other-seq-related tools☆22Updated 4 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 9 months ago
- Python biomart API☆63Updated last year
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆30Updated 4 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆94Updated last week
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆74Updated last week
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated 3 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆72Updated 3 years ago
- Detecting intron retention from RNA-Seq experiments☆53Updated 4 months ago
- Genome-wide assessment of differential translations with ribosome profiling data☆18Updated 2 years ago
- Interactive multiscale visualization for structural variation in human genomes☆66Updated this week
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆110Updated 11 months ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆73Updated 4 months ago
- ☆37Updated 4 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 6 months ago