mpg-age-bioinformatics / AGEpyLinks
Bioinformatics tools for Python
☆25Updated 6 months ago
Alternatives and similar repositories for AGEpy
Users that are interested in AGEpy are comparing it to the libraries listed below
Sorting:
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- Python package to analyze DNA methylation data☆42Updated 7 months ago
- Tools for working with BUS files☆100Updated 3 weeks ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆83Updated 4 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆64Updated 2 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- Quantification of transposable element expression using RNA-seq☆71Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆54Updated 3 weeks ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆94Updated 10 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆54Updated last month
- Python biomart API☆65Updated 2 years ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 6 months ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 5 months ago
- A Python library to visualize and analyze long-read transcriptomes☆62Updated last month
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated last month
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 6 months ago
- Publication quality NGS track plotting☆113Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 4 months ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Transcription Factor Enrichment Analysis☆34Updated last month
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆36Updated last week
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆119Updated last year
- Unsorted scripts for bioinformatics☆61Updated 3 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆39Updated 2 weeks ago
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago