Alternatives and similar repositories for AGEpy

Users that are interested in AGEpy are comparing it to the libraries listed below

• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• liguowang / cpgtools
  Python package to analyze DNA methylation data
  ☆44Updated last month
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆74Updated this week
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆90Updated 3 months ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆50Updated 3 years ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆126Updated 11 months ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆51Updated 2 months ago
• sebriois / biomart
  Python biomart API
  ☆69Updated 2 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆59Updated 11 months ago
• gatk-workflows / gatk4-rnaseq-germline-snps-indels
  Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
  ☆84Updated 4 years ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆57Updated 6 years ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆53Updated this week
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆107Updated last week
• crazyhottommy / machine-learning-resource
  ☆87Updated last year
• vanallenlab / comut
  CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
  ☆96Updated last year
• biocore-ntnu / epic2
  Ultraperformant reimplementation of SICER
  ☆58Updated 2 months ago
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆78Updated 4 months ago
• asntech / pyjaspar
  pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs
  ☆35Updated last week
• alexfields / ORF-RATER
  Regression-based annotation of protein-coding sequences from ribosome profiling data
  ☆32Updated 5 years ago
• eturro / mmseq
  Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads
  ☆68Updated last year
• openvax / neoantigen-vaccine-pipeline
  Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
  ☆89Updated 4 months ago
• HussainAther / awesome-alternative-splicing
  Alternative splicing resource
  ☆58Updated 7 years ago
• gaolabtools / scNanoGPS
  Single cell Nanopore sequencing data for Genotype and Phenotype
  ☆57Updated 8 months ago
• phageghost / python-genome-browser
  Tools for making plots of genomic datasets in a genome-browser-like format
  ☆33Updated last year
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆26Updated 2 years ago
• crazyhottommy / oneliner_100day_challenge
  Bioinformatics one-liner for 100 days
  ☆49Updated last year
• murphycj / AGFusion
  Python package to annotate and visualize gene fusions.
  ☆65Updated last year
• YichaoOU / HemTools
  HemTools: a collection of NGS pipelines and bioinformatic analyses
  ☆74Updated last month
• BUStools / bustools
  Tools for working with BUS files
  ☆102Updated 8 months ago
• tkzeng / Pangolin
  Pangolin is a deep-learning method for predicting splice site strengths.
  ☆85Updated last year