mpg-age-bioinformatics / AGEpyLinks
Bioinformatics tools for Python
☆25Updated 2 weeks ago
Alternatives and similar repositories for AGEpy
Users that are interested in AGEpy are comparing it to the libraries listed below
Sorting:
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 2 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆70Updated this week
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆50Updated 2 weeks ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆88Updated last month
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆122Updated 2 months ago
- Parsing tools for GTF (gene transfer format) files☆122Updated 9 months ago
- Python package to analyze DNA methylation data☆44Updated last month
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated last year
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Updated 6 months ago
- Python biomart API☆69Updated 2 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 9 months ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- A simple pythonic interface to biomart.☆57Updated 5 years ago
- MOODS: Motif Occurrence Detection Suite☆106Updated 2 years ago
- Tools for working with BUS files☆102Updated 6 months ago
- Ultraperformant reimplementation of SICER☆58Updated last week
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Universal RObust Peak Annotator☆16Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 7 months ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆52Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- Visual exploratory analysis of gene expression data☆44Updated 3 weeks ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆82Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆39Updated last month
- A rust framework to make using alevin-fry even simpler☆60Updated 7 months ago
- cfDNA cell type of origin estimation☆33Updated 2 years ago