FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program
☆20Sep 16, 2021Updated 5 years ago
Alternatives and similar repositories for BISB-Bootcamp-2021
Users that are interested in BISB-Bootcamp-2021 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dataloader for applying sequence models to personalized genomics☆31Updated this week
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Pipeline which removes human DNA from microbial shotgun samples.☆16Aug 25, 2025Updated last year
- UZH BIO392: Bioinformatics of Sequence Variation Course Repository☆15May 29, 2026Updated 5 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆88Oct 26, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Utilities for large scale distributed single cell data processing☆24Jan 20, 2026Updated 9 months ago
- Supplementary files for our Aneuploidy Detection paper☆10Jul 5, 2018Updated 8 years ago
- Case-control matching for microbiome data☆10Aug 8, 2023Updated 3 years ago
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆25Updated this week
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 3 years ago
- Multinomial Logistic-Normal Models (really fast)☆20Oct 30, 2026Updated last week
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆27Jan 25, 2022Updated 4 years ago
- ☆17May 22, 2023Updated 3 years ago
- ☆10Dec 11, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆18Apr 6, 2023Updated 3 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Apr 13, 2026Updated 6 months ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆93Jul 13, 2026Updated 3 months ago
- Boilerplate for Flask framework. [Hackathon edition]☆10Sep 19, 2013Updated 13 years ago
- Scalable population structure inference☆19Oct 22, 2022Updated 4 years ago
- The repository for the Viral Genomics and Bioinformatics 2022 course☆11Jul 5, 2024Updated 2 years ago
- Container class to represent genomic locations and support genomic analysis☆28Updated this week
- Light-weight Jupyter notebook tracker.☆33Sep 30, 2026Updated last month
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆15Mar 7, 2019Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆35Apr 4, 2025Updated last year
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Jan 8, 2024Updated 2 years ago
- ViReport analysis of COVID-19 using GISAID data☆20Sep 20, 2020Updated 6 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Jan 27, 2026Updated 9 months ago
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 4 years ago
- Beginning of a textbook for shell skills for bioinformatics☆11Oct 7, 2025Updated last year
- Miscellaneous code related to my blog posts or other purposes☆12Jun 2, 2021Updated 5 years ago
- Toolkit for single-cell DNA methylation analysis.☆52May 25, 2026Updated 5 months ago
- Sparse reduced-rank regression☆20Jan 8, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆12Apr 17, 2024Updated 2 years ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 6 years ago
- Learning materials for the 3000788 Introduction to Computational Molecular Biology course☆24Jul 8, 2026Updated 3 months ago
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- List of startups Accelerators and Incubators☆11May 23, 2019Updated 7 years ago
- Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!☆13Sep 12, 2025Updated last year
- Mapping pipeline for snmC-seq based technologies.☆20Sep 25, 2023Updated 3 years ago