mragsac / BISB-Bootcamp-2021Links
FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program
☆19Updated 3 years ago
Alternatives and similar repositories for BISB-Bootcamp-2021
Users that are interested in BISB-Bootcamp-2021 are comparing it to the libraries listed below
Sorting:
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last month
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆24Updated 3 years ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated 2 weeks ago
- ☆44Updated last week
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 7 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆49Updated last month
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆32Updated 3 years ago
- Module for embedding igv.js in an IPython notebook☆76Updated 5 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- ☆39Updated last week
- Bioinformatics tools for Python☆25Updated 7 months ago
- A Python library to visualize and analyze long-read transcriptomes☆62Updated 2 months ago
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆65Updated last week
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆90Updated this week
- A rust framework to make using alevin-fry even simpler☆54Updated 2 months ago
- Collection of analysis tools for quantitative trait loci☆55Updated 2 weeks ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆59Updated 2 months ago
- Transcription Factor Enrichment Analysis☆34Updated last week
- Tools for working with BUS files☆100Updated last month
- ☆18Updated 3 years ago
- A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.☆18Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 7 months ago
- machine-readable file format for genomic library sequence and structure☆120Updated this week
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆42Updated last week
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated last month
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆64Updated last week
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆69Updated 3 months ago