Alternatives and similar repositories for BISB-Bootcamp-2021

Users that are interested in BISB-Bootcamp-2021 are comparing it to the libraries listed below

• rajewsky-lab / spacemake
  ☆44Updated last week
• cellatlas / human
  ☆43Updated 7 months ago
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆24Updated 2 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated 3 weeks ago
• phageghost / python-genome-browser
  Tools for making plots of genomic datasets in a genome-browser-like format
  ☆32Updated 6 months ago
• regulatory-genomics / precellar
  ☆27Updated this week
• nf-core / spatialvi
  Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…
  ☆64Updated last week
• gaolabtools / scNanoGPS
  Single cell Nanopore sequencing data for Genotype and Phenotype
  ☆54Updated last month
• czbiohub-sf / cerebra
  A tool for fast and accurate summarizing of variant calling format (VCF) files
  ☆61Updated 2 years ago
• KenLauLab / dropkick
  Automated cell filtering for single-cell RNA sequencing data
  ☆24Updated last year
• dozmorovlab / excluderanges
  Genomic coordinates of problematic genomic regions as GRanges
  ☆40Updated 6 months ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆62Updated last month
• Dowell-Lab / TFEA
  Transcription Factor Enrichment Analysis
  ☆34Updated last month
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 5 years ago
• aertslab / pycistarget
  pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …
  ☆17Updated 5 months ago
• COMBINE-lab / simpleaf
  A rust framework to make using alevin-fry even simpler
  ☆54Updated last month
• OscarGVelasco / LotOfCells
  R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data
  ☆22Updated 10 months ago
• sandberg-lab / Smart-seq3
  Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).
  ☆52Updated 3 years ago
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated 2 years ago
• ay-lab / dcHiC
  dcHiC: Differential compartment analysis for Hi-C datasets
  ☆69Updated last year
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated 2 weeks ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆42Updated last week
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆25Updated 3 weeks ago
• vierstralab / motif-clustering
  Clustering motif models to remove redundancy
  ☆42Updated 2 years ago
• YeoLab / outrigger
  Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
  ☆66Updated 5 years ago
• aertslab / CREsted
  CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…
  ☆40Updated last week
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆60Updated 3 weeks ago
• crazyhottommy / awesome-long-reads
  tools and notes for long reads analysis
  ☆23Updated 2 months ago
• OceanGenomics / mudskipper
  A tool for projecting genomic alignments to transcriptomic coordinates
  ☆36Updated last year
• mskcc-omics-workflows / modules
  A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for M…
  ☆11Updated 2 weeks ago