FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program
☆19Sep 16, 2021Updated 4 years ago
Alternatives and similar repositories for BISB-Bootcamp-2021
Users that are interested in BISB-Bootcamp-2021 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dataloader for applying sequence models to personalized genomics☆30Updated this week
- Effortless Pixi Project Management Integration in VSCode☆32Apr 26, 2026Updated last month
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆20Jun 8, 2026Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆87Nov 16, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Utilities for large scale distributed single cell data processing☆24Jan 20, 2026Updated 4 months ago
- Tool for analyzing clusters of genes using LLM providers.☆30May 26, 2026Updated 3 weeks ago
- Supplementary files for our Aneuploidy Detection paper☆10Jul 5, 2018Updated 7 years ago
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Feb 26, 2019Updated 7 years ago
- ☆17May 22, 2023Updated 3 years ago
- Case-control matching for microbiome data☆10Aug 8, 2023Updated 2 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- Container class to represent genomic locations and support genomic analysis☆27Updated this week
- ☆18Apr 6, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Apr 13, 2026Updated 2 months ago
- Pipeline which removes human DNA from microbial shotgun samples.☆16Aug 25, 2025Updated 9 months ago
- ☆10Dec 11, 2024Updated last year
- Examples of great academic lab expectations, manuals, policies for joining and being in the lab☆51Jul 25, 2019Updated 6 years ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆15Mar 7, 2019Updated 7 years ago
- Light-weight Jupyter notebook tracker.☆34Apr 30, 2025Updated last year
- AI agents + toolkits for scientific knowledge☆41May 13, 2026Updated last month
- ViReport analysis of COVID-19 using GISAID data☆20Sep 20, 2020Updated 5 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Jan 27, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- Mapping pipeline for snmC-seq based technologies.☆20Sep 25, 2023Updated 2 years ago
- Pyranges: a Python framework for ultrafast sequence interval operations☆56May 30, 2026Updated 2 weeks ago
- Sparse reduced-rank regression☆20Jan 8, 2025Updated last year
- Miscellaneous code related to my blog posts or other purposes☆12Jun 2, 2021Updated 5 years ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- Scripts and files for the annual Short Read Analysis Workshop☆13Jun 4, 2026Updated 2 weeks ago
- Bayesian Inferential Regression for Differential Microbiome Analysis☆25Jun 5, 2026Updated last week
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆24Jun 11, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!☆13Sep 12, 2025Updated 9 months ago
- Stray has been renamed fido, development continues at jsilve24/fido☆23Jan 26, 2022Updated 4 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 5 years ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated 2 years ago
- UZH BIO392: Bioinformatics of Sequence Variation Course Repository☆14May 29, 2026Updated 2 weeks ago
- ☆27Apr 15, 2025Updated last year
- Scripts for building computational models of gene regulation with tensorflow☆27May 3, 2023Updated 3 years ago