Alternatives and similar repositories for BISB-Bootcamp-2021

Users that are interested in BISB-Bootcamp-2021 are comparing it to the libraries listed below

• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated last week
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆24Updated last month
• regulatory-genomics / precellar
  ☆25Updated last week
• phageghost / python-genome-browser
  Tools for making plots of genomic datasets in a genome-browser-like format
  ☆32Updated 5 months ago
• open2c / quaich
  snakemake pipeline for Hi-C post-processing
  ☆22Updated 11 months ago
• asrhou / scMatch
  scMatch: a single-cell gene expression profile annotation tool using reference datasets
  ☆24Updated 3 years ago
• YeoLab / outrigger
  Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
  ☆66Updated 5 years ago
• cellatlas / human
  ☆43Updated 7 months ago
• BUStools / bustools
  Tools for working with BUS files
  ☆99Updated last week
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆46Updated 2 months ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆28Updated last month
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆43Updated 4 months ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 5 years ago
• brianyiktaktsui / Skymap
  High-throughput gene to knowledge mapping through massive integration of public sequencing data.
  ☆31Updated 6 years ago
• rajewsky-lab / spacemake
  ☆44Updated last week
• bernardo-de-almeida / motif-clustering
  Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy
  ☆26Updated 2 years ago
• Dowell-Lab / TFEA
  Transcription Factor Enrichment Analysis
  ☆34Updated last month
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆41Updated 2 years ago
• COMBINE-lab / simpleaf
  A rust framework to make using alevin-fry even simpler
  ☆54Updated last month
• dozmorovlab / excluderanges
  Genomic coordinates of problematic genomic regions as GRanges
  ☆39Updated 5 months ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆49Updated 8 months ago
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 2 years ago
• mcvickerlab / GenVarLoader
  Dataloader for applying sequence models to personalized genomics
  ☆26Updated this week
• gagneurlab / absplice
  ☆39Updated 8 months ago
• qinqian / lisa
  epigenome analysis to rank transcription factors
  ☆30Updated 2 years ago
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆28Updated last year
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆35Updated 2 weeks ago
• KenLauLab / dropkick
  Automated cell filtering for single-cell RNA sequencing data
  ☆24Updated last year
• parklab / LiRA
  ☆18Updated 3 years ago
• OceanGenomics / mudskipper
  A tool for projecting genomic alignments to transcriptomic coordinates
  ☆36Updated last year